Evidence map›Paper›PMID 25778938›Full record

ArticleJournal of inherited metabolic disease2015

Unstable argininosuccinate lyase in variant forms of the urea cycle disorder argininosuccinic aciduria.

Liyan Hu, Amit V Pandey, Cécile Balmer, Sandra Eggimann, Véronique Rüfenacht, Jean-Marc Nuoffer, Johannes Häberle

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In one paragraph

Article in Journal of inherited metabolic disease, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Liyan HuDivision of Metabolism, University Children's Hospital Zurich, Zurich, 8032, Switzerland.
Amit V Pandey
Cécile Balmer
Sandra Eggimann
Véronique Rüfenacht
Jean-Marc Nuoffer
Johannes Häberle
University Children's Hospital Zurich · CHUniversity of Bern · CHUniversity Children’s Hospital Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Loss of function of the urea cycle enzyme argininosuccinate lyase (ASL) is caused by mutations in the ASL gene leading to ASL deficiency (ASLD). ASLD has a broad clinical spectrum ranging from life-threatening severe neonatal to asymptomatic forms. Different levels of residual ASL activity probably contribute to the phenotypic variability but reliable expression systems allowing clinically useful conclusions are not yet available. In order to define the molecular characteristics underlying the phenotypic variability, we investigated all ASL mutations that were hitherto identified in patients with late onset or mild clinical and biochemical courses by ASL expression in human embryonic kidney 293 T cells. We found residual activities >3% of ASL wild type (WT) in nine of 11 ASL mutations. Six ASL mutations (p.Arg95Cys, p.Ile100Thr, p.Val178Met, p.Glu189Gly, p.Val335Leu, and p.Arg379Cys) with residual activities ≥16% of ASL WT showed no significant or less than twofold reduced Km values, but displayed thermal instability. Computational structural analysis supported the biochemical findings by revealing multiple effects including protein instability, disruption of ionic interactions and hydrogen bonds between residues in the monomeric form of the protein, and disruption of contacts between adjacent monomeric units in the ASL tetramer. These findings suggest that the clinical and biochemical course in variant forms of ASLD is associated with relevant residual levels of ASL activity as well as instability of mutant ASL proteins. Since about 30% of known ASLD genotypes are affected by mutations studied here, ASLD should be considered as a candidate for chaperone treatment to improve mutant protein stability.

Indexed as

Mutation, MissenseAmino Acid SequenceAmino Acid SubstitutionArgininosuccinate LyaseArgininosuccinic AciduriaEnzyme StabilityHEK293 CellsHumansModels, MolecularMolecular Sequence DataNucleic Acid ConformationRNA, MessengerRNA StabilityTemperatureTransfectionUrea Cycle Disorders, InbornArgininosuccinate LyaseRNA, Messenger

Identifiers

PMID25778938
OpenAlexW1984819523

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.