Evidence map›Paper›PMID 25778509›Full record

ArticleFEMS microbiology ecology2015

The carbon starvation response of the ectomycorrhizal fungus Paxillus involutus.

Magnus Ellström, Firoz Shah, Tomas Johansson, Dag Ahrén, Per Persson, Anders Tunlid

Open access · hybridAbstract read
In one paragraph

Article in FEMS microbiology ecology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
7.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 32 citations in OpenAlex.

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  12. Two PFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Magnus EllströmMicrobial Ecology, Department of Biology, Lund University, Ecology Building, SE 223 62 Lund, Sweden Centre for Environmental and Climate Research (CEC), Lund University, Ecology Building, SE 223 62 Lund, Sweden.
Firoz ShahMicrobial Ecology, Department of Biology, Lund University, Ecology Building, SE 223 62 Lund, Sweden.
Tomas JohanssonMicrobial Ecology, Department of Biology, Lund University, Ecology Building, SE 223 62 Lund, Sweden.
Dag AhrénMicrobial Ecology, Department of Biology, Lund University, Ecology Building, SE 223 62 Lund, Sweden BILS Bioinformatics Infrastructure for Life Sciences, Department of Biology, Lund University, Ecology Building, SE 223 62 Lund, Sweden.
Per PerssonMicrobial Ecology, Department of Biology, Lund University, Ecology Building, SE 223 62 Lund, Sweden Centre for Environmental and Climate Research (CEC), Lund University, Ecology Building, SE 223 62 Lund, Sweden.
Anders TunlidMicrobial Ecology, Department of Biology, Lund University, Ecology Building, SE 223 62 Lund, Sweden anders.tunlid@biol.lu.se.
Lund University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The amounts of carbon allocated to the fungal partner in ectomycorrhizal associations can vary substantially depending on the plant growth and the soil nutrient conditions, and the fungus may frequently be confronted with limitations in carbon. We used chemical analysis and transcriptome profiling to examine the physiological response of the ectomycorrhizal fungus Paxillus involutus to carbon starvation during axenic cultivation. Carbon starvation induced a decrease in the biomass. Concomitantly, ammonium, cell wall material (chitin) and proteolytic enzymes were released into the medium, which suggest autolysis. Compared with the transcriptome of actively growing hyphae, about 45% of the transcripts analyzed were differentially regulated during C-starvation. Induced during starvation were transcripts encoding extracellular enzymes such as peptidases, chitinases and laccases. In parallel, transcripts of N-transporters were upregulated, which suggest that some of the released nitrogen compounds were re-assimilated by the mycelium. The observed changes suggest that the carbon starvation response in P. involutus is associated with complex cellular changes that involves autolysis, recycling of intracellular compounds by autophagy and reabsorption of the extracellular released material. The study provides molecular markers that can be used to examine the role of autolysis for the turnover and survival of the ectomycorrhizal mycelium in soils.

Indexed as

AutolysisBasidiomycotaBiomassCarbonCarrier ProteinsChitinasesGene Expression ProfilingHyphaeLaccaseMyceliumMycorrhizaePeptide HydrolasesSoilSoil MicrobiologyTranscriptomeCarbonCarrier ProteinsChitinasesLaccasePeptide HydrolasesSoilammonium releaseautolysisautophagybasidiomycetetranscriptome

Identifiers

PMID25778509
PMCPMC4434801
OpenAlexW2123455813

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.