Evidence map›Paper›PMID 25778469›Full record

ArticleThe pharmacogenomics journal2015

Genetic variants in DNA repair genes as potential predictive markers for oxaliplatin chemotherapy in colorectal cancer.

E J Kap, P Seibold, S Richter, D Scherer, N Habermann, Y Balavarca, L Jansen, N Becker, K Pfütze, O Popanda and 7 more

Abstract read
In one paragraph

Article in The pharmacogenomics journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Validation of Genetic Markers Associated with Survival in Colorectal Cancer Patients Treated with Oxaliplatin-Based Chemotherapy.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2022
    Observational
  7. Pharmaceutics · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Polymorphisms in DNA repair pathway genes andCancer management and research · 2019
    Article
  12. Article
  13. MAT1 correlates with molecular subtypes and predicts poor survival in breast cancer.Chinese journal of cancer research = Chung-kuo yen cheng yen chiu · 2018
    Article
  14. Reactive oxygen species mediate oxaliplatin-induced epithelial-mesenchymal transition and invasive potential in colon cancer.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 2 countries.

E J KapDivision of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
P SeiboldDivision of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
S RichterDivision of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
D SchererDivision of Preventive Oncology, National Center for Tumor Diseases (NCT) and DKFZ, Heidelberg, Germany.
N HabermannDivision of Preventive Oncology, National Center for Tumor Diseases (NCT) and DKFZ, Heidelberg, Germany.
Y BalavarcaDivision of Preventive Oncology, National Center for Tumor Diseases (NCT) and DKFZ, Heidelberg, Germany.
L JansenDivision of Clinical Epidemiology and Aging Research, DKFZ, Heidelberg, Germany.
N BeckerDivision of Biostatistics, DKFZ, Heidelberg, Germany.
K PfützeDivision of Molecular Epidemiology, DKFZ, Heidelberg, Germany.
O PopandaDivision of Epigenomics and Cancer Risk Factors, DKFZ, Heidelberg, Germany.
M HoffmeisterDivision of Clinical Epidemiology and Aging Research, DKFZ, Heidelberg, Germany.
A UlrichDepartment of General, Visceral and Transplantation Surgery, University Hospital Heidelberg, University of Heidelberg, Heidelberg, Germany.
A BennerDivision of Biostatistics, DKFZ, Heidelberg, Germany.
C M UlrichDivision of Preventive Oncology, National Center for Tumor Diseases (NCT) and DKFZ, Heidelberg, Germany.
B BurwinkelDivision of Molecular Epidemiology, DKFZ, Heidelberg, Germany.
H BrennerDivision of Clinical Epidemiology and Aging Research, DKFZ, Heidelberg, Germany.
J Chang-ClaudeDivision of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Heidelberg University · DEGerman Cancer Research Center · DE

Funding

Molecular pathological epidemiology of colorectal cancerU01CA137088 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETERS, ULRIKE · 2009 to 2018
$21.8M
Genome-Wide Association Study of Nonsynonymous SNPs in Colon CancerR01CA059045 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETERS, ULRIKE · 1994 to 2011
$11.5M
NCI NIH HHS R01 CA059045NCI NIH HHS U01 CA137088
6 · The paper itself

Abstract

Oxaliplatin-based chemotherapy exerts its effects through generating DNA damage. Hence, genetic variants in DNA repair pathways could modulate treatment response. We used a prospective cohort of 623 colorectal cancer patients with stage II-IV disease treated with adjuvant/palliative chemotherapy to comprehensively investigate 1727 genetic variants in the DNA repair pathways as potential predictive markers for oxaliplatin treatment. Single nucleotide polymorphisms (SNP) associations with overall survival and recurrence-free survival were assessed using a Cox regression model. Pathway analysis was performed using the gamma method. Patients carrying variant alleles of rs3783819 (MNAT1) and rs1043953 (XPC) experienced a longer overall survival after treatment with oxaliplatin than patients who did not carry the variant allele, while the opposite association was found in patients who were not treated with oxaliplatin (false discovery rate-adjusted P-values for heterogeneity 0.0047 and 0.0237, respectively). The nucleotide excision repair (NER) pathway was found to be most likely associated with overall survival in patients who received oxaliplatin (P-value=0.002). Our data show that genetic variants in the NER pathway are potentially predictive of treatment response to oxaliplatin.

Indexed as

AgedAllelesBiomarkers, TumorCase-Control StudiesColorectal NeoplasmsDNA-Binding ProteinsDNA RepairFemaleGenotypeHumansMaleMiddle AgedOrganoplatinum CompoundsOxaliplatinPolymorphism, Single NucleotideProspective StudiesBiomarkers, TumorDNA-Binding ProteinsOrganoplatinum CompoundsOxaliplatin

Identifiers

PMID25778469
PMCPMC4573779
OpenAlexW2002753352

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.