Evidence map›Paper›PMID 25777528›Full record

ArticleThe EMBO journal2015

X-ray and Cryo-EM structures reveal mutual conformational changes of Kinesin and GTP-state microtubules upon binding.

Manatsu Morikawa, Hiroaki Yajima, Ryo Nitta, Shigeyuki Inoue, Toshihiko Ogura, Chikara Sato, Nobutaka Hirokawa

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 94 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Modeling study of kinesin-13 MCAK microtubule depolymerase.European biophysics journal : EBJ · 2024
    Article
  5. Tether-scanning the kinesin motor domain reveals a core mechanical action.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Multiple roles for the cytoskeleton in ALS.Experimental neurology · 2022
    Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Modeling processive motion of kinesin-13 MCAK and kinesin-14 Cik1-Kar3 molecular motors.Protein science : a publication of the Protein Society · 2021
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Manatsu MorikawaDepartment of Cell Biology and Anatomy, The University of Tokyo, Hongo Tokyo, Japan Department of Molecular Structure and Dynamics, Graduate School of Medicine, The University of Tokyo, Hongo Tokyo, Japan.
Hiroaki YajimaDepartment of Cell Biology and Anatomy, The University of Tokyo, Hongo Tokyo, Japan Department of Molecular Structure and Dynamics, Graduate School of Medicine, The University of Tokyo, Hongo Tokyo, Japan.
Ryo NittaDepartment of Cell Biology and Anatomy, The University of Tokyo, Hongo Tokyo, Japan Department of Molecular Structure and Dynamics, Graduate School of Medicine, The University of Tokyo, Hongo Tokyo, Japan.
Shigeyuki InoueDepartment of Cell Biology and Anatomy, The University of Tokyo, Hongo Tokyo, Japan Department of Molecular Structure and Dynamics, Graduate School of Medicine, The University of Tokyo, Hongo Tokyo, Japan.
Toshihiko OguraBiomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba Ibaraki, Japan.
Chikara SatoBiomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba Ibaraki, Japan.
Nobutaka HirokawaDepartment of Cell Biology and Anatomy, The University of Tokyo, Hongo Tokyo, Japan Department of Molecular Structure and Dynamics, Graduate School of Medicine, The University of Tokyo, Hongo Tokyo, Japan Center of Excellence in Genomic Medicine Research (CEGMR), KAU, Jeddah, Saudi Arabia hirokawa@m.u-tokyo.ac.jp.
The University of Tokyo · JPNational Institute of Advanced Industrial Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular motor kinesin moves along microtubules using energy from ATP hydrolysis in an initial step coupled with ADP release. In neurons, kinesin-1/KIF5C preferentially binds to the GTP-state microtubules over GDP-state microtubules to selectively enter an axon among many processes; however, because the atomic structure of nucleotide-free KIF5C is unavailable, its molecular mechanism remains unresolved. Here, the crystal structure of nucleotide-free KIF5C and the cryo-electron microscopic structure of nucleotide-free KIF5C complexed with the GTP-state microtubule are presented. The structures illustrate mutual conformational changes induced by interaction between the GTP-state microtubule and KIF5C. KIF5C acquires the 'rigor conformation', where mobile switches I and II are stabilized through L11 and the initial portion of the neck-linker, facilitating effective ADP release and the weak-to-strong transition of KIF5C microtubule affinity. Conformational changes to tubulin strengthen the longitudinal contacts of the GTP-state microtubule in a similar manner to GDP-taxol microtubules. These results and functional analyses provide the molecular mechanism of the preferential binding of KIF5C to GTP-state microtubules.

Indexed as

Adenosine DiphosphateAmino Acid SequenceAnimalsBinding SitesCryoelectron MicroscopyCrystallography, X-RayGuanosine TriphosphateKinesinsMiceMicrotubulesModels, MolecularMolecular Docking SimulationMolecular Sequence DataProtein Conformation5'-guanylylmethylenebisphosphonateAdenosine DiphosphateGuanosine TriphosphateKIF5C protein, mouseKinesinscryo‐electron microscopykinesinmicrotubulepolarized transport in neuronX‐ray crystallography

Identifiers

PMID25777528
PMCPMC4426485
OpenAlexW2070712030

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.