Evidence map›Paper›PMID 25776753›Full record

ArticleInfection and immunity2015

Correlates between models of virulence for Mycobacterium tuberculosis among isolates of the Central Asian lineage: a case for lysozyme resistance testing?

Claire Pardieu, Nicola Casali, Simon O Clark, Richard Hooper, Ann Williams, Preya Velji, Ximena Gonzalo, Francis Drobniewski

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Claire PardieuClinical TB and HIV Group, Centre for Immunology and Infectious Disease, Queen Mary University of London, London, United Kingdom c.pardieu@qmul.ac.uk f.drobniewski@qmul.ac.uk.
Nicola CasaliClinical TB and HIV Group, Centre for Immunology and Infectious Disease, Queen Mary University of London, London, United Kingdom Department of Infectious Diseases and Immunity, Hammersmith Hospital, Imperial College, London, United Kingdom.
Simon O ClarkPorton Down, Public Health England, Salisbury, United Kingdom.
Richard HooperCentre for Primary Care and Public Health, Queen Mary University of London, London, United Kingdom.
Ann WilliamsPorton Down, Public Health England, Salisbury, United Kingdom.
Preya VeljiClinical TB and HIV Group, Centre for Immunology and Infectious Disease, Queen Mary University of London, London, United Kingdom.
Ximena GonzaloClinical TB and HIV Group, Centre for Immunology and Infectious Disease, Queen Mary University of London, London, United Kingdom Department of Infectious Diseases and Immunity, Hammersmith Hospital, Imperial College, London, United Kingdom.
Francis DrobniewskiClinical TB and HIV Group, Centre for Immunology and Infectious Disease, Queen Mary University of London, London, United Kingdom Department of Infectious Diseases and Immunity, Hammersmith Hospital, Imperial College, London, United Kingdom National Mycobacterium Reference Laboratory, Public Health England, London, United Kingdom c.pardieu@qmul.ac.uk f.drobniewski@qmul.ac.uk.
Public Health England · GBQueen Mary University of London · GBHammersmith Hospital · GB

Funding

Wellcome Trust 076964
6 · The paper itself

Abstract

Virulence factors (VFs) contribute to the emergence of new human Mycobacterium tuberculosis strains, are lineage dependent, and are relevant to the development of M. tuberculosis drugs/vaccines. VFs were sought within M. tuberculosis lineage 3, which has the Central Asian (CAS) spoligotype. Three isolates were selected from clusters previously identified as dominant in London, United Kingdom. Strain-associated virulence was studied in guinea pig, monocyte-derived macrophage, and lysozyme resistance assays. Whole-genome sequencing, single nucleotide polymorphism (SNP) analysis, and a literature review contributed to the identification of SNPs of interest. The animal model revealed borderline differences in strain-associated pathogenicity. Ex vivo, isolate C72 exhibited statistically significant differences in intracellular growth relative to C6 and C14. SNP candidates inducing lower fitness levels included 123 unique nonsynonymous SNPs, including three located in genes (lysX, caeA, and ponA2) previously identified as VFs in the laboratory-adapted reference strain H37Rv and shown to confer lysozyme resistance. C72 growth was most affected by lysozyme in vitro. A BLAST search revealed that all three SNPs of interest (C35F, P76Q, and P780R) also occurred in Tiruvallur, India, and in Uganda. Unlike C72, however, no single isolate identified through BLAST carried all three SNPs simultaneously. CAS isolates representative of three medium-sized human clusters demonstrated differential outcomes in models commonly used to estimate strain-associated virulence, supporting the idea that virulence varies within, not just across, M. tuberculosis lineages. Three VF SNPs of interest were identified in two additional locations worldwide, which suggested independent selection and supported a role for these SNPs in virulence. The relevance of lysozyme resistance to strain virulence remains to be established.

Indexed as

AdultAntitubercular AgentsAsiaBacterial ProteinsDrug Resistance, BacterialFemaleGene Expression Regulation, BacterialHumansMaleMiddle AgedMuramidaseMycobacterium tuberculosisPolymorphism, Single NucleotideTuberculosisVirulenceVirulence FactorsAntitubercular AgentsBacterial ProteinsMuramidaseVirulence Factors

Identifiers

PMID25776753
PMCPMC4432750
OpenAlexW2169124978

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.