Evidence map›Paper›PMID 25776730›Full record

ArticleBirth defects research. Part A, Clinical and molecular teratology2015

Association of facilitated glucose transporter 2 gene variants with the myelomeningocele phenotype.

Jaclyn E Ruggiero, Hope Northrup, Kit Sing Au

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in Birth defects research. Part A, Clinical and molecular teratology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Mutations in folate transporter genes and risk for human myelomeningocele.American journal of medical genetics. Part A · 2017
    Article
  5. Genetic association of the glycine cleavage system genes and myelomeningocele.Birth defects research. Part A, Clinical and molecular teratology · 2016
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Jaclyn E RuggieroDivision of Neonatal-Perinatal Medicine, Department of Pediatrics, The University of Texas Medical School at Houston, Houston, Texas.
Hope NorthrupDivision of Medical Genetics, Department of Pediatrics, The University of Texas Medical School at Houston, Houston, Texas.
Kit Sing AuDivision of Medical Genetics, Department of Pediatrics, The University of Texas Medical School at Houston, Houston, Texas.
Houston Perinatal Associates · USTexas Medical Center · USThe University of Texas Health Science Center at Houston · US

Funding

SUBJECT RECRUITMENT AND EVALUATION COREP01HD035946 · NICHD · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI FLETCHER, JACK M · 1998 to 2009
$10.8M
NICHD NIH HHS P01 HD035946NICHD NIH HHS P01 HD35946-06A2
6 · The paper itself

Abstract

backgroundNeural tube defects (NTDs) remain the second most common cause of congenital malformations. Myelomeningocele (MM), the most common NTD compatible with survival, results from genetic and environmental factors. Epidemiologic studies and murine models support the hypotheses that obesity, diabetes and hyperglycemia confer increased risk of NTDs. Presence of wild-type facilitated glucose transporter, Glut2, in mouse embryos has been shown to increase risk for NTDs in hyperglycemic pregnancy.

methodsThe GLUT2 gene of 96 MM patients was amplified, sequenced and compared with the reference sequence (NM_000340). Variants previously unreported in the single nucleotide polymorphisms (SNP) database were considered novel. Allele frequencies of reported SNPs were compared with reference populations using Fisher's exact test.

resultsAnalysis revealed three novel variants: a substitution in the core promoter region (c.-331c>t), a substitution (c.-182g>a) in the 5'-untranslated region, and a single base pair deletion (c.1441delT) in the coding sequences. Polymorphic alleles for 10 SNPs were also identified. Seven SNPs are significantly associated with MM in the Mexican American patients tested (p < 0.05) and two of the seven remained significant after Bonferroni correction.

conclusionWe identified three novel variants and seven SNPs associated with MM. The novel variants in the core promoter and in the 5'-untranslated region could affect GLUT2 mRNA transcription and stability and translation efficiency. The c.1441delT variant is predicted to alter the reading frame and prematurely terminate translation of the GLUT2 protein at the C-terminus, affecting GLUT2 protein function. Presence of GLUT2 variants may disrupt GLUT2 activity and influence MM susceptibility.

Indexed as

Base SequenceGene FrequencyGenetic Association StudiesGlucose Transporter Type 2HumansLos AngelesMeningomyeloceleMexican AmericansMolecular Sequence DataOntarioPolymorphism, Single NucleotideSequence Analysis, DNATexasGlucose Transporter Type 2SLC2A2 protein, humanassociationfacilitated glucose transporter 2myelomeningoceleneural tube defectsnovel variantssingle nucleotide polymorphism

Identifiers

PMID25776730
PMCPMC4478216
OpenAlexW2157511157

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.