Evidence map›Paper›PMID 25776537›Full record

ArticleScientific reports2015

Topological analysis of the Escherichia coli WcaJ protein reveals a new conserved configuration for the polyisoprenyl-phosphate hexose-1-phosphate transferase family.

Sarah E Furlong, Amy Ford, Lorena Albarnez-Rodriguez, Miguel A Valvano

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 41 citations in OpenAlex.

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  8. Glycoconjugate pathway connections revealed by sequence similarity network analysis of the monotopic phosphoglycosyl transferases.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Sarah E FurlongCentre for Human Immunology, Department of Microbiology and Immunology, University of Western Ontario, London, Ontario, N6A 5C1, Canada.
Amy FordCentre for Infection and Immunity, Queen's University Belfast, Belfast, United Kingdom, BT9 7AE.
Lorena Albarnez-RodriguezCentre for Human Immunology, Department of Microbiology and Immunology, University of Western Ontario, London, Ontario, N6A 5C1, Canada.
Miguel A Valvano1] Centre for Human Immunology, Department of Microbiology and Immunology, University of Western Ontario, London, Ontario, N6A 5C1, Canada [2] Centre for Infection and Immunity, Queen's University Belfast, Belfast, United Kingdom, BT9 7AE.
Queen's University Belfast · GBWestern University · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

WcaJ is an Escherichia coli membrane enzyme catalysing the biosynthesis of undecaprenyl-diphosphate-glucose, the first step in the assembly of colanic acid exopolysaccharide. WcaJ belongs to a large family of polyisoprenyl-phosphate hexose-1-phosphate transferases (PHPTs) sharing a similar predicted topology consisting of an N-terminal domain containing four transmembrane helices (TMHs), a large central periplasmic loop, and a C-terminal domain containing the fifth TMH (TMH-V) and a cytosolic tail. However, the topology of PHPTs has not been experimentally validated. Here, we investigated the topology of WcaJ using a combination of LacZ/PhoA reporter fusions and sulfhydryl labelling by PEGylation of novel cysteine residues introduced into a cysteine-less WcaJ. The results showed that the large central loop and the C-terminal tail both reside in the cytoplasm and are separated by TMH-V, which does not fully span the membrane, likely forming a "hairpin" structure. Modelling of TMH-V revealed that a highly conserved proline might contribute to a helix-break-helix structure in all PHPT members. Bioinformatic analyses show that all of these features are conserved in PHPT homologues from Gram-negative and Gram-positive bacteria. Our data demonstrate a novel topological configuration for PHPTs, which is proposed as a signature for all members of this enzyme family.

Indexed as

Models, MolecularProtein ConformationAmino Acid SequenceAmino Acid SubstitutionEnzyme ActivationMembrane ProteinsMolecular Sequence DataPhosphotransferases (Phosphate Group Acceptor)Protein Interaction Domains and MotifsProtein Structure, SecondaryRecombinant Fusion ProteinsStructure-Activity RelationshipMembrane ProteinsPhosphotransferases (Phosphate Group Acceptor)Recombinant Fusion ProteinsWcaJ protein, E coli

Identifiers

PMID25776537
PMCPMC4361858
OpenAlexW2008150063

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.