Evidence map›Paper›PMID 25775548›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Altered cofactor regulation with disease-associated p97/VCP mutations.

Xiaoyi Zhang, Lin Gui, Xiaoyan Zhang, Stacie L Bulfer, Valentina Sanghez, Daniel E Wong, YouJin Lee, Lynn Lehmann, James Siho Lee, Pei-Yin Shih and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 111 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Allosteric activation of VCP, an AAA unfoldase, by small molecule mimicry.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Golgi defect as a major contributor to lysosomal dysfunction.Frontiers in cell and developmental biology · 2024
    Review
  16. Review
  17. Review
  18. Review
  19. Common Markers and Small Molecule Inhibitors in Golgi Studies.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Xiaoyi ZhangDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center, Los Angeles Biomedical Research Institute, Torrance, CA 90502; College of Pharmaceutical Sciences, Capital Medical University, Beijing 100069, People's Republic of China;
Lin GuiDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center, Los Angeles Biomedical Research Institute, Torrance, CA 90502; College of Pharmaceutical Sciences, Capital Medical University, Beijing 100069, People's Republic of China;
Xiaoyan ZhangDepartment of Molecular, Cellular and Developmental Biology, The University of Michigan, Ann Arbor, MI 48109-1048;
Stacie L BulferSmall Molecule Discovery Center, Department of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158;
Valentina SanghezDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center, Los Angeles Biomedical Research Institute, Torrance, CA 90502;
Daniel E WongDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center, Los Angeles Biomedical Research Institute, Torrance, CA 90502;
YouJin LeeDepartment of Neurology, Washington University School of Medicine, St. Louis, MO 63110;
Lynn LehmannNanoTemper Technologies, Inc., South San Francisco, CA 94080;
James Siho LeeDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125.
Pei-Yin ShihDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125.
Henry J LinDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center, Los Angeles Biomedical Research Institute, Torrance, CA 90502;
Michelina IacovinoDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center, Los Angeles Biomedical Research Institute, Torrance, CA 90502;
Conrad C WeihlDepartment of Neurology, Washington University School of Medicine, St. Louis, MO 63110;
Michelle R ArkinSmall Molecule Discovery Center, Department of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158;
Yanzhuang WangDepartment of Molecular, Cellular and Developmental Biology, The University of Michigan, Ann Arbor, MI 48109-1048;
Tsui-Fen ChouDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center, Los Angeles Biomedical Research Institute, Torrance, CA 90502; tsuifenchou@ucla.edu.
The Lundquist Institute · USUCLA Medical Center · USCalifornia Institute of Technology · USUniversity of California, San Francisco · USWashington University in St. Louis · USUniversity of Michigan–Ann Arbor · US

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
University of Michigan Center for Gastrointestinal ResearchP30DK034933 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OMARY, BISHR · 1986 to 2021
$22.5M
VCP in myopathy and dementiaR01AG031867 · NIA · WASHINGTON UNIVERSITY · PI CONRAD C WEIHL · 2009 to 2026
$9.1M
GOLGI MATRIX ASSEMBLY AND DISASSEMBLY IN THE CELL CYCLER01GM105920 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ANDREWS, PHILIP C, WANG, YANZHUANG · 2014 to 2017
$1.9M
Ubiquitin and Cell Cycle Regulation of Golgi Membrane DynamicsR01GM087364 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WANG, YANZHUANG · 2009 to 2013
$1.5M
Supplement: GOLGI BIOGENESIS AND FUNCTIONR01GM112786 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WANG, YANZHUANG · 2015 to 2019
$1.3M
AUTOPHAGIC DYSFUNCTION IN IBMPFD ASSOCIATED MUSCLE DISEASEK02AG042095 · NIA · WASHINGTON UNIVERSITY · PI WEIHL, CONRAD C · 2012 to 2016
$671k
CCR NIH HHS HHSN261200800001CNCATS NIH HHS UL1 TR000124NCATS NIH HHS UL1TR000124NCI NIH HHS HHSN261200800001ENIA NIH HHS AG031867NIA NIH HHS AG042095NIA NIH HHS K02 AG042095NIA NIH HHS R01 AG031867NIDDK NIH HHS P30 DK034933NIGMS NIH HHS GM087364NIGMS NIH HHS GM105920NIGMS NIH HHS R01 GM087364NIGMS NIH HHS R01 GM105920NIGMS NIH HHS R01 GM112786
6 · The paper itself

Abstract

Dominant mutations in p97/VCP (valosin-containing protein) cause a rare multisystem degenerative disease with varied phenotypes that include inclusion body myopathy, Paget's disease of bone, frontotemporal dementia, and amyotrophic lateral sclerosis. p97 disease mutants have altered N-domain conformations, elevated ATPase activity, and altered cofactor association. We have now discovered a previously unidentified disease-relevant functional property of p97 by identifying how the cofactors p37 and p47 regulate p97 ATPase activity. We define p37 as, to our knowledge, the first known p97-activating cofactor, which enhances the catalytic efficiency (kcat/Km) of p97 by 11-fold. Whereas both p37 and p47 decrease the Km of ATP in p97, p37 increases the kcat of p97. In contrast, regulation by p47 is biphasic, with decreased kcat at low levels but increased kcat at higher levels. By deleting a region of p47 that lacks homology to p37 (amino acids 69-92), we changed p47 from an inhibitory cofactor to an activating cofactor, similar to p37. Our data suggest that cofactors regulate p97 ATPase activity by binding to the N domain. Induced conformation changes affect ADP/ATP binding at the D1 domain, which in turn controls ATPase cycling. Most importantly, we found that the D2 domain of disease mutants failed to be activated by p37 or p47. Our results show that cofactors play a critical role in controlling p97 ATPase activity, and suggest that lack of cofactor-regulated communication may contribute to p97-associated disease pathogenesis.

Indexed as

MutationAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesAdenosine TriphosphateAutophagyBone DiseasesCell Cycle ProteinsCell Line, TumorChromatography, GelGolgi ApparatusHomeostasisHumansMuscular DiseasesNeurodegenerative DiseasesPhenotypeProtein Structure, TertiaryAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesAdenosine TriphosphateCell Cycle Proteinsp37 protein, humanValosin Containing ProteinVCP protein, humanAAA ATPaseMSP1p47p97/VCPsteady-state kinetics

Identifiers

PMID25775548
PMCPMC4394316
OpenAlexW1977455683

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.