Evidence map›Paper›PMID 25775537›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Ribosome-SRP-FtsY cotranslational targeting complex in the closed state.

Ottilie von Loeffelholz, Qiyang Jiang, Aileen Ariosa, Manikandan Karuppasamy, Karine Huard, Imre Berger, Shu-ou Shan, Christiane Schaffitzel

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Sequential activation of human signal recognition particle by the ribosome and signal sequence drives efficient protein targeting.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. The ribosome and its role in protein folding: looking through a magnifying glass.Acta crystallographica. Section D, Structural biology · 2017
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Dynamics of co-translational protein targeting.Current opinion in chemical biology · 2015
    Review
  13. Polyproteins in structural biology.Current opinion in structural biology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Ottilie von LoeffelholzEuropean Molecular Biology Laboratory, Grenoble 38042, France; Unit for Virus Host-Cell Interactions, Université Grenoble Alpes, European Molecular Biology Laboratory, CNRS, Grenoble 38042, France;
Qiyang JiangEuropean Molecular Biology Laboratory, Grenoble 38042, France; Unit for Virus Host-Cell Interactions, Université Grenoble Alpes, European Molecular Biology Laboratory, CNRS, Grenoble 38042, France;
Aileen AriosaDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125; and.
Manikandan KaruppasamyEuropean Molecular Biology Laboratory, Grenoble 38042, France; Unit for Virus Host-Cell Interactions, Université Grenoble Alpes, European Molecular Biology Laboratory, CNRS, Grenoble 38042, France;
Karine HuardEuropean Molecular Biology Laboratory, Grenoble 38042, France; Unit for Virus Host-Cell Interactions, Université Grenoble Alpes, European Molecular Biology Laboratory, CNRS, Grenoble 38042, France;
Imre BergerEuropean Molecular Biology Laboratory, Grenoble 38042, France; Unit for Virus Host-Cell Interactions, Université Grenoble Alpes, European Molecular Biology Laboratory, CNRS, Grenoble 38042, France; School of Biochemistry, University of Bristol, Bristol BS8 1TD, United Kingdom.
Shu-ou ShanDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125; and.
Christiane SchaffitzelEuropean Molecular Biology Laboratory, Grenoble 38042, France; Unit for Virus Host-Cell Interactions, Université Grenoble Alpes, European Molecular Biology Laboratory, CNRS, Grenoble 38042, France; School of Biochemistry, University of Bristol, Bristol BS8 1TD, United Kingdom schaffitzel@embl.fr.
Centre National de la Recherche Scientifique · FRCalifornia Institute of Technology · USUniversité Grenoble Alpes · FRUniversity of Bristol · GB

Funding

Molecular Mechanism of Protein Targeting by the Signal Recognition ParticleR01GM078024 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI SHAN, SHU-OU · 2007 to 2020
$4.4M
European Research Council 281331NIGMS NIH HHS R01 GM078024
6 · The paper itself

Abstract

The signal recognition particle (SRP)-dependent pathway is essential for correct targeting of proteins to the membrane and subsequent insertion in the membrane or secretion. In Escherichia coli, the SRP and its receptor FtsY bind to ribosome-nascent chain complexes with signal sequences and undergo a series of distinct conformational changes, which ensures accurate timing and fidelity of protein targeting. Initial recruitment of the SRP receptor FtsY to the SRP-RNC complex results in GTP-independent binding of the SRP-FtsY GTPases at the SRP RNA tetraloop. In the presence of GTP, a closed state is adopted by the SRP-FtsY complex. The cryo-EM structure of the closed state reveals an ordered SRP RNA and SRP M domain with a signal sequence-bound. Van der Waals interactions between the finger loop and ribosomal protein L24 lead to a constricted signal sequence-binding pocket possibly preventing premature release of the signal sequence. Conserved M-domain residues contact ribosomal RNA helices 24 and 59. The SRP-FtsY GTPases are detached from the RNA tetraloop and flexible, thus liberating the ribosomal exit site for binding of the translocation machinery.

Indexed as

Bacterial ProteinsCloning, MolecularCryoelectron MicroscopyEscherichia coliImage Processing, Computer-AssistedModels, MolecularProtein BindingProtein BiosynthesisProtein Sorting SignalsProtein Structure, TertiaryReceptors, Cytoplasmic and NuclearRibosomesSignal Recognition ParticleBacterial ProteinsFtsY protein, BacteriaProtein Sorting SignalsReceptors, Cytoplasmic and NuclearSignal Recognition Particleprotein targetingribosomesignal recognition particlesignal sequencesingle-particle electron cryomicroscopy

Identifiers

PMID25775537
PMCPMC4386334
OpenAlexW2023165276

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.