ArticlePloS one2015
Complete chloroplast genome of the multifunctional crop globe artichoke and comparison with other Asteraceae.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.
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80 citing papers in PubMed, 133 citations in OpenAlex.
- Plastomes of TenEcology and evolution · 2026Article
- Refined chloroplast annotations, repeat profiles, and phylogenomic evidence reveal maternal lineage shifts and independent evolution in the Triticum-Aegilops complex.BMC plant biology · 2026Article
- Sequence dynamics and plastome evolution: decoding the complete chloroplast genome of Oenothera drummondii and comparative analysis within Oenothera (Onagraceae).Functional & integrative genomics · 2025Article
- Determination of the Phylogenetic Relationship ofCurrent issues in molecular biology · 2025Article
- Evolutionary genetics analysis for complete plastomes and diversification rate estimation of Deutzia and Philadelphus in tribe Philadelpheae (Hydrangeaceae).BMC plant biology · 2025Article
- Revisiting Phryma leptostachya L.: phylogenetic relationships and biogeographical patterns from complete plastome.BMC plant biology · 2025Article
- Interactions between chloroplast and mitochondrial genomes in 11Frontiers in plant science · 2025Article
- The complete chloroplast genomes and comparative study of the two tung trees of Vernicia (Euphorbiaceae).BMC genomics · 2024Article
- Sequence characteristics, genetic diversity and phylogenetic analysis of the Cucurbita ficifolia (Cucurbitaceae) chloroplasts genome.BMC genomics · 2024Article
- The complete plastome sequences of invasive weed Parthenium hysterophorus: genome organization, evolutionary significance, structural features, and comparative analysis.Scientific reports · 2024Article
- Insights into comparative genomics, structural features, and phylogenetic relationship of species from EurasianFrontiers in plant science · 2024Article
- The Chloroplast Genome of Endive (Genes · 2023Article
- Bioactive Compounds from Artichoke and Application Potential.Food technology and biotechnology · 2023Review
- Comparative chloroplast genome analysis of seven extant Citrullus species insight into genetic variation, phylogenetic relationships, and selective pressure.Scientific reports · 2023Article
- Comparative chloroplast genome analysis ofFrontiers in plant science · 2023Article
- The Complete Chloroplast Genome Sequence ofGenes · 2022Article
- Comparative Analyses of Complete Chloroplast Genomes and Karyotypes of AllotetraploidInternational journal of molecular sciences · 2022Article
- Article
- Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequences.BMC plant biology · 2022Article
- Phylogenomic and comparative analyses of Coffeeae alliance (Rubiaceae): deep insights into phylogenetic relationships and plastome evolution.BMC plant biology · 2022Article
20 more citing papers are in PubMed but not listed here.
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Authors and funding
5 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With over 20,000 species, Asteraceae is the second largest plant family. High-throughput sequencing of nuclear and chloroplast genomes has allowed for a better understanding of the evolutionary relationships within large plant families. Here, the globe artichoke chloroplast (cp) genome was obtained by a combination of whole-genome and BAC clone high-throughput sequencing. The artichoke cp genome is 152,529 bp in length, consisting of two single-copy regions separated by a pair of inverted repeats (IRs) of 25,155 bp, representing the longest IRs found in the Asteraceae family so far. The large (LSC) and the small (SSC) single-copy regions span 83,578 bp and 18,641 bp, respectively. The artichoke cp sequence was compared to the other eight Asteraceae complete cp genomes available, revealing an IR expansion at the SSC/IR boundary. This expansion consists of 17 bp of the ndhF gene generating an overlap between the ndhF and ycf1 genes. A total of 127 cp simple sequence repeats (cpSSRs) were identified in the artichoke cp genome, potentially suitable for future population studies in the Cynara genus. Parsimony-informative regions were evaluated and allowed to place a Cynara species within the Asteraceae family tree. The eight most informative coding regions were also considered and tested for "specific barcode" purpose in the Asteraceae family. Our results highlight the usefulness of cp genome sequencing in exploring plant genome diversity and retrieving reliable molecular resources for phylogenetic and evolutionary studies, as well as for specific barcodes in plants.
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