Evidence map›Paper›PMID 25774636›Full record

ArticleNature genetics2015

Susceptibility to tuberculosis is associated with variants in the ASAP1 gene encoding a regulator of dendritic cell migration.

James Curtis, Yang Luo, Helen L Zenner, Delphine Cuchet-Lourenço, Changxin Wu, Kitty Lo, Mailis Maes, Ali Alisaac, Emma Stebbings, Jimmy Z Liu and 13 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed, 7 pooled it
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 7 syntheses or guidelines pooled it, 173 citations in OpenAlex.

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40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 3 countries.

James Curtis *Department of Medicine, University of Cambridge, Cambridge, UK.
Yang Luo *Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Helen L Zenner *Department of Medicine, University of Cambridge, Cambridge, UK.
Delphine Cuchet-LourençoDepartment of Medicine, University of Cambridge, Cambridge, UK.
Changxin WuDepartment of Medicine, University of Cambridge, Cambridge, UK.
Kitty LoUniversity College London Genetics Institute, University College London, London, UK.
Mailis MaesDepartment of Medicine, University of Cambridge, Cambridge, UK.
Ali AlisaacDepartment of Medicine, University of Cambridge, Cambridge, UK.
Emma StebbingsDepartment of Medicine, University of Cambridge, Cambridge, UK.
Jimmy Z LiuWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Liliya KopanitsaDepartment of Medicine, University of Cambridge, Cambridge, UK.
Olga IgnatyevaSamara Oblast Tuberculosis Dispensary, Samara, Russia.
Yanina BalabanovaRobert Koch Institute, Berlin, Germany.
Vladyslav NikolayevskyyPublic Health England National Mycobacterium Reference Laboratory, London, UK.
Ingelore BaessmannCologne Center for Genomics, University of Cologne, Cologne, Germany.
Thorsten ThyeDepartment of Molecular Medicine, Bernhard Nocht Institute for Topical Medicine, Hamburg, Germany.
Christian G MeyerDepartment of Molecular Medicine, Bernhard Nocht Institute for Topical Medicine, Hamburg, Germany.
Peter NürnbergCologne Center for Genomics, University of Cologne, Cologne, Germany.
Rolf D HorstmannDepartment of Molecular Medicine, Bernhard Nocht Institute for Topical Medicine, Hamburg, Germany.
Francis DrobniewskiPublic Health England National Mycobacterium Reference Laboratory, London, UK.
Vincent PlagnolUniversity College London Genetics Institute, University College London, London, UK.
Jeffrey C BarrettWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Sergey NejentsevDepartment of Medicine, University of Cambridge, Cambridge, UK.
University of Cambridge · GBBernhard Nocht Institute for Tropical Medicine · DEQueen Mary University of London · GBWellcome Sanger Institute · GBUniversity College London · GBUniversity of Cologne · DESamara Medical Institute Reaviz · RU

Funding

Wellcome Trust 076113Wellcome Trust 085475Wellcome Trust 088838Wellcome Trust 088838/Z/09/ZWellcome Trust 090355Wellcome Trust 095198Wellcome Trust 095198/Z/10/Z
6 · The paper itself

Abstract

Human genetic factors predispose to tuberculosis (TB). We studied 7.6 million genetic variants in 5,530 people with pulmonary TB and in 5,607 healthy controls. In the combined analysis of these subjects and the follow-up cohort (15,087 TB patients and controls altogether), we found an association between TB and variants located in introns of the ASAP1 gene on chromosome 8q24 (P = 2.6 × 10(-11) for rs4733781; P = 1.0 × 10(-10) for rs10956514). Dendritic cells (DCs) showed high ASAP1 expression that was reduced after Mycobacterium tuberculosis infection, and rs10956514 was associated with the level of reduction of ASAP1 expression. The ASAP1 protein is involved in actin and membrane remodeling and has been associated with podosomes. The ASAP1-depleted DCs showed impaired matrix degradation and migration. Therefore, genetically determined excessive reduction of ASAP1 expression in M. tuberculosis-infected DCs may lead to their impaired migration, suggesting a potential mechanism of predisposition to TB.

Indexed as

Adaptor Proteins, Signal TransducingAdultCase-Control StudiesCell MovementCells, CulturedDendritic CellsFemaleGene ExpressionGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansIntronsMaleMiddle AgedPolymorphism, Single NucleotideProtein TransportAdaptor Proteins, Signal TransducingASAP1 protein, human

Identifiers

PMID25774636
PMCPMC4414475
OpenAlexW1992890129

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.