Evidence map›Paper›PMID 25773600›Full record

ArticleMolecular cell2015

Mitochondrial and nuclear accumulation of the transcription factor ATFS-1 promotes OXPHOS recovery during the UPR(mt).

Amrita M Nargund, Christopher J Fiorese, Mark W Pellegrino, Pan Deng, Cole M Haynes

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 289 papers.

0numbers the graph read from it
0cells of the map it votes in
289citing papers in PubMed
16.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

289 citing papers in PubMed, 463 citations in OpenAlex.

  1. Article
  2. Regulation of cellular proteostasis via mitochondrial protein import.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2026
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  10. A Forward Genetic Screen inbioRxiv : the preprint server for biology · 2026
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  18. Function and regulation of the mitochondrial stress response.Nature structural & molecular biology · 2026
    Review
  19. Article
  20. Article

229 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Amrita M NargundCell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Christopher J FioreseCell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; BCMB Allied Program, Weill Cornell Medical College, New York, NY 10065, USA.
Mark W PellegrinoCell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Pan DengCell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; BCMB Allied Program, Weill Cornell Medical College, New York, NY 10065, USA.
Cole M HaynesCell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; BCMB Allied Program, Weill Cornell Medical College, New York, NY 10065, USA. Electronic address: haynesc@mskcc.org.
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Elisa de Stanchina · 1985 to 2026
$347.4M
TRAINING PROGRAM IN MOLECULAR AND CELLULAR BIOLOGYT32GM008539 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI BROWN, ANTHONY M.C. · 1995 to 2020
$5.0M
MAINTENANCE OF MITOCHONDRIAL PROTEIN FOLDING AS AN AGING EFFECTORR01AG040061 · NIA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI HAYNES, COLE M · 2011 to 2020
$3.6M
Coordinated Repair and Regeneration of Defective MitochondriaR37AG047182 · NIA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Cole M Haynes · 2020 to 2026
$3.2M
Coordinated Repair and Regeneration of Defective MitochondriaR01AG047182 · NIA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI HAYNES, COLE M · 2015 to 2019
$2.1M
ATFS-1 mediates the coordination of mitochondrial and nuclear genome expressionF32GM102974 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI NARGUND, AMRITA M. · 2013 to 2013
$52k
NCI NIH HHS P30 CA008748NIA NIH HHS R01 AG040061NIA NIH HHS R01AG040061NIA NIH HHS R01 AG047182NIA NIH HHS R01AG047182NIA NIH HHS R37 AG047182NIGMS NIH HHS F32 GM102974NIGMS NIH HHS F32GM102974NIGMS NIH HHS T32 GM008539
6 · The paper itself

Abstract

Mitochondrial diseases and aging are associated with defects in the oxidative phosphorylation machinery (OXPHOS), which are the only complexes composed of proteins encoded by separate genomes. To better understand genome coordination and OXPHOS recovery during mitochondrial dysfunction, we examined ATFS-1, a transcription factor that regulates mitochondria-to-nuclear communication during the mitochondrial UPR, via ChIP-sequencing. Surprisingly, in addition to regulating mitochondrial chaperone, OXPHOS complex assembly factor, and glycolysis genes, ATFS-1 bound directly to OXPHOS gene promoters in both the nuclear and mitochondrial genomes. Interestingly, atfs-1 was required to limit the accumulation of OXPHOS transcripts during mitochondrial stress, which required accumulation of ATFS-1 in the nucleus and mitochondria. Because balanced ATFS-1 accumulation promoted OXPHOS complex assembly and function, our data suggest that ATFS-1 stimulates respiratory recovery by fine-tuning OXPHOS expression to match the capacity of the suboptimal protein-folding environment in stressed mitochondria, while simultaneously increasing proteostasis capacity.

Indexed as

Genome, MitochondrialAnimalsBase SequenceCaenorhabditis elegansCaenorhabditis elegans ProteinsCell NucleusCitric Acid CycleDNA, MitochondrialGenome, HelminthMitochondriaMolecular Sequence DataOxidative PhosphorylationProtein FoldingProtein StabilityProtein TransportRNA, MessengerATFS-1 protein, C elegansCaenorhabditis elegans ProteinsDNA, MitochondrialRNA, MessengerTranscription Factors

Identifiers

PMID25773600
PMCPMC4385436
OpenAlexW2007389227

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.