Evidence map›Paper›PMID 25773144›Full record

ArticleStructure (London, England : 1993)2015

Dynamic changes during acid-induced activation of influenza hemagglutinin.

Natalie K Garcia, Miklos Guttman, Jamie L Ebner, Kelly K Lee

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Universal stabilization of the influenza hemagglutinin by structure-based redesign of the pH switch regions.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Review
  12. Article
  13. Hemagglutinin Structure and Activities.Cold Spring Harbor perspectives in medicine · 2021
    Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Natalie K GarciaDepartment of Medicinal Chemistry, University of Washington, Seattle, WA 98195, USA.
Miklos GuttmanDepartment of Medicinal Chemistry, University of Washington, Seattle, WA 98195, USA.
Jamie L EbnerDepartment of Medicinal Chemistry, University of Washington, Seattle, WA 98195, USA.
Kelly K LeeDepartment of Medicinal Chemistry, University of Washington, Seattle, WA 98195, USA. Electronic address: kklee@uw.edu.

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
Waters ACQUITY UPLC M-Class with NanoLockSpray ionization sourceR01GM099989 · NIGMS · UNIVERSITY OF WASHINGTON · PI LEE, KELLY KEISEN · 2012 to 2020
$3.5M
Influenza Hemagglutinin: Structure, Dynamics, and Cooperativity During FusionR00GM080352 · NIGMS · UNIVERSITY OF WASHINGTON · PI LEE, KELLY KEISEN · 2009 to 2011
$740k
Investigating the Architecture of HIV Envelope GlycoproteinF32GM097805 · NIGMS · UNIVERSITY OF WASHINGTON · PI GUTTMAN, MIKLOS · 2012 to 2013
$101k
NCRR NIH HHS P41 RR001209NCRR NIH HHS P41-RR001209NIGMS NIH HHS F32 GM097805NIGMS NIH HHS F32-GM097805NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41-GM103393NIGMS NIH HHS R00 GM080352NIGMS NIH HHS R00-GM080352NIGMS NIH HHS R01 GM099989NIGMS NIH HHS R01-GM099989NIGMS NIH HHS T32 GM007750NIGMS NIH HHS T32-GM007750
6 · The paper itself

Abstract

Influenza hemagglutinin (HA) mediates virus attachment to host cells and fusion of the viral and endosomal membranes during entry. While high-resolution structures are available for the pre-fusion HA ectodomain and the post-fusion HA2 subunit, the sequence of conformational changes during HA activation has eluded structural characterization. Here, we apply hydrogen-deuterium exchange with mass spectrometry to examine changes in structural dynamics of the HA ectodomain at various stages of activation, and compare the soluble ectodomain with intact HA on virions. At pH conditions approaching activation (pH 6.0-5.5) HA exhibits increased dynamics at the fusion peptide and neighboring regions, while the interface between receptor binding subunits (HA1) becomes stabilized. In contrast to many activation models, these data suggest that HA responds to endosomal acidification by releasing the fusion peptide prior to HA1 uncaging and the spring-loaded refolding of HA2. This staged process may facilitate efficient HA-mediated fusion.

Indexed as

Molecular Dynamics SimulationAmino Acid SequenceBinding SitesHemagglutinin Glycoproteins, Influenza VirusHydrogenHydrogen-Ion ConcentrationMolecular Sequence DataProtein BindingProtein SubunitsHemagglutinin Glycoproteins, Influenza VirusHydrogenProtein Subunits

Identifiers

PMID25773144
PMCPMC4499473

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.