Evidence map›Paper›PMID 25772937›Full record

ArticleAmerican journal of human genetics2015

Submicroscopic deletions at 13q32.1 cause congenital microcoria.

Lucas Fares-Taie, Sylvie Gerber, Akihiko Tawara, Arturo Ramirez-Miranda, Jean-Yves Douet, Hannah Verdin, Antoine Guilloux, Juan C Zenteno, Hiroyuki Kondo, Hugo Moisset and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 14 institutions in 5 countries.

Lucas Fares-TaieLaboratory of Genetics in Ophthalmology (LGO), INSERM UMR1163, IMAGINE - Institute of Genetic Diseases, Paris Descartes University, 75015 Paris, France.
Sylvie GerberLaboratory of Genetics in Ophthalmology (LGO), INSERM UMR1163, IMAGINE - Institute of Genetic Diseases, Paris Descartes University, 75015 Paris, France.
Akihiko TawaraDepartment of Ophthalmology, University of Occupational & Environmental Health, Kitakyushu 807-8555, Japan.
Arturo Ramirez-MirandaDepartment of Cornea and Refractive Surgery, Instituto de Oftalmologia "Conde de Valenciana," UNAM, Mexico City, DF 06800, Mexico.
Jean-Yves DouetVeterinary School of Toulouse, University of Toulouse, 31300 Toulouse, France.
Hannah VerdinCenter for Medical Genetics, Ghent University, 9000 Ghent, Belgium.
Antoine GuillouxLaboratory of Genetics in Ophthalmology (LGO), INSERM UMR1163, IMAGINE - Institute of Genetic Diseases, Paris Descartes University, 75015 Paris, France.
Juan C ZentenoDepartment of Genetics-Research Unit, Instituto de Oftalmologia "Conde de Valenciana" and Department of Biochemistry, Faculty of Medicine, UNAM, Mexico City, DF 06800, Mexico.
Hiroyuki KondoDepartment of Ophthalmology, University of Occupational & Environmental Health, Kitakyushu 807-8555, Japan.
Hugo MoissetLaboratory of Genetics in Ophthalmology (LGO), INSERM UMR1163, IMAGINE - Institute of Genetic Diseases, Paris Descartes University, 75015 Paris, France.
Bruno PassetUMR1313 Génétique Animale et Biologie Intégrative, Institut Nationale de la Recherche Agronomique, 78352 Jouy-en-Josas, France.
Ken YamamotoDivision of Genome Analysis, Institute of Bioregulation, Kyushu University, Fukuoka 812-8582, Japan.
Masaru IwaiDepartment of Molecular Cardiovascular Biology and Pharmacology, Ehime University Graduate School of Medicine, Ehime 791-0295, Japan; National Hospital Organization, Ehime Medical Center, Tohon, Ehime 791-0281, Japan.
Toshihiro TanakaDepartment of Human Genetics and Disease Diversity, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, 113-0034 Tokyo, Japan; Division of Disease Diversity, Bioresource Research Center, Tokyo Medical and Dental University, 113-0034 Tokyo, Japan; Laboratory for Cardiovascular Diseases, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan.
Yusuke NakamuraDepartment of Medicine and Surgery, The University of Chicago, Chicago, IL 60637, USA.
Wataru KimuraKimura Eye Clinic, Kure 737-0046, Japan.
Christine Bole-FeysotGenomics Platform, IMAGINE Foundation and Paris Descartes University, 75015 Paris, France.
Marthe VilotteUMR1313 Génétique Animale et Biologie Intégrative, Institut Nationale de la Recherche Agronomique, 78352 Jouy-en-Josas, France.
Sylvie OdentService de Génétique Clinique, CHU Hôpital Sud, 35203 Rennes, France.
Jean-Luc VilotteUMR1313 Génétique Animale et Biologie Intégrative, Institut Nationale de la Recherche Agronomique, 78352 Jouy-en-Josas, France.
Arnold MunnichLaboratory of Genetics in Ophthalmology (LGO), INSERM UMR1163, IMAGINE - Institute of Genetic Diseases, Paris Descartes University, 75015 Paris, France.
Alain RegnierVeterinary School of Toulouse, University of Toulouse, 31300 Toulouse, France.
Nicolas ChassaingService de Génétique Clinique, Hôpital Purpan, 31300 Toulouse, France.
Elfride De BaereCenter for Medical Genetics, Ghent University, 9000 Ghent, Belgium.
Isabelle Raymond-LetronVeterinary School of Toulouse, University of Toulouse, 31300 Toulouse, France.
Josseline KaplanLaboratory of Genetics in Ophthalmology (LGO), INSERM UMR1163, IMAGINE - Institute of Genetic Diseases, Paris Descartes University, 75015 Paris, France.
Patrick CalvasService de Génétique Clinique, Hôpital Purpan, 31300 Toulouse, France.
Olivier RocheDepartment of Ophthalmology, IHU Necker-Enfants Malades, University Paris-Descartes, 75015 Paris, France. Electronic address: oph.roche@free.fr.
Jean-Michel RozetLaboratory of Genetics in Ophthalmology (LGO), INSERM UMR1163, IMAGINE - Institute of Genetic Diseases, Paris Descartes University, 75015 Paris, France. Electronic address: jean-michel.rozet@inserm.fr.
Inserm · FRAgroParisTech · FRÉcole Nationale Vétérinaire de Toulouse · FRCentre Hospitalier Universitaire de Toulouse · FRDélégation Paris 5 · FRGhent University Hospital · BEOcular Proteomics (United States) · USUniversity of Occupational and Environmental Health Japan · JPEhime Medical Center · JPHôpital Nord · FRKagoshima University · JPKawamura Hospital · JPKyushu University · JPUniversity of Chicago · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Congenital microcoria (MCOR) is a rare autosomal-dominant disorder characterized by inability of the iris to dilate owing to absence of dilator pupillae muscle. So far, a dozen MCOR-affected families have been reported worldwide. By using whole-genome oligonucleotide array CGH, we have identified deletions at 13q32.1 segregating with MCOR in six families originating from France, Japan, and Mexico. Breakpoint sequence analyses showed nonrecurrent deletions in 5/6 families. The deletions varied from 35 kbp to 80 kbp in size, but invariably encompassed or interrupted only two genes: TGDS encoding the TDP-glucose 4,6-dehydratase and GPR180 encoding the G protein-coupled receptor 180, also known as intimal thickness-related receptor (ITR). Unlike TGDS which has no known function in muscle cells, GPR180 is involved in the regulation of smooth muscle cell growth. The identification of a null GPR180 mutation segregating over two generations with iridocorneal angle dysgenesis, which can be regarded as a MCOR endophenotype, is consistent with the view that deletions of this gene, with or without the loss of elements regulating the expression of neighboring genes, are the cause of MCOR.

Indexed as

Chromosome DeletionBase SequenceChromosomes, Human, Pair 13Comparative Genomic HybridizationGene ComponentsGenes, DominantHumansHydro-LyasesMolecular Sequence DataMutationOligonucleotide Array Sequence AnalysisPedigreePupil DisordersReceptors, Cell SurfaceReceptors, G-Protein-CoupledSequence Analysis, DNAGPR180 protein, humanHydro-LyasesReceptors, Cell SurfaceReceptors, G-Protein-Coupled

Identifiers

PMID25772937
PMCPMC4385178
OpenAlexW2050135394

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.