Evidence map›Paper›PMID 25772360›Full record

ArticleCell reports2015

Developmentally Regulated Post-translational Modification of Nucleoplasmin Controls Histone Sequestration and Deposition.

Takashi Onikubo, Joshua J Nicklay, Li Xing, Christopher Warren, Brandon Anson, Wei-Lin Wang, Emmanuel S Burgos, Sophie E Ruff, Jeffrey Shabanowitz, R Holland Cheng and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
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  16. Calmodulin-mediated events during the life cycle of the amoebozoan Dictyostelium discoideum.Biological reviews of the Cambridge Philosophical Society · 2020
    Review
  17. Review
  18. Article
  19. Article
  20. Chromatin Characterization inCold Spring Harbor protocols · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Takashi OnikuboDepartment of Biochemistry, Albert Einstein College of Medicine, Yeshiva University, Bronx, NY 10461, USA.
Joshua J NicklayDepartment of Chemistry, University of Virginia, Charlottesville, VA 22901, USA.
Li XingDepartment of Molecular and Cellular Biology, University of California-Davis, Davis, CA 95616, USA.
Christopher WarrenDepartment of Biochemistry, Albert Einstein College of Medicine, Yeshiva University, Bronx, NY 10461, USA.
Brandon AnsonDepartment of Molecular and Cellular Biology, University of California-Davis, Davis, CA 95616, USA.
Wei-Lin WangDepartment of Biochemistry, Albert Einstein College of Medicine, Yeshiva University, Bronx, NY 10461, USA.
Emmanuel S BurgosDepartment of Biochemistry, Albert Einstein College of Medicine, Yeshiva University, Bronx, NY 10461, USA.
Sophie E RuffDepartment of Biochemistry, Albert Einstein College of Medicine, Yeshiva University, Bronx, NY 10461, USA.
Jeffrey ShabanowitzDepartment of Chemistry, University of Virginia, Charlottesville, VA 22901, USA.
R Holland ChengDepartment of Molecular and Cellular Biology, University of California-Davis, Davis, CA 95616, USA.
Donald F HuntDepartments of Chemistry and Pathology, University of Virginia, Charlottesville, VA 22904, USA. Electronic address: dfh@virginia.edu.
David ShechterDepartment of Biochemistry, Albert Einstein College of Medicine, Yeshiva University, Bronx, NY 10461, USA. Electronic address: david.shechter@einstein.yu.edu.
Yeshiva University · USUniversity of California, Davis · USUniversity of Virginia · USAlbert Einstein College of Medicine · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
PROTEIN SEQUENCING BY TANDEM MASS SPECTROMETRYR01GM037537 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HUNT, DONALD F · 1987 to 2023
$17.8M
TRAINING PROGRAM IN CELLULAR &MOLEC. BIOLOGY &GENETICST32GM007491 · NIGMS · YESHIVA UNIVERSITY · PI QUERY, CHARLES C · 1985 to 2021
$17.0M
PRMT5-MEP50 Histone Arginine Methylation in Early DevelopmentR01GM108646 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI SHECHTER, DAVID · 2014 to 2022
$3.2M
Present Homologous and Heterologous Antigen with Hepatitis E VirusR56AI095382 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CHENG, R.HOLLAND · 2012 to 2012
$385k
NCI NIH HHS P30 CA013330NIAID NIH HHS R56 AI095382NIGMS NIH HHS R01 GM037537NIGMS NIH HHS R01 GM108646NIGMS NIH HHS T32 GM007491
6 · The paper itself

Abstract

Nucleoplasmin (Npm) is an abundant histone chaperone in vertebrate oocytes and embryos. During embryogenesis, regulation of Npm histone binding is critical for its function in storing and releasing maternal histones to establish and maintain the zygotic epigenome. Here, we demonstrate that Xenopus laevis Npm post-translational modifications (PTMs) specific to the oocyte and egg promote either histone deposition or sequestration, respectively. Mass spectrometry and Npm phosphomimetic mutations used in chromatin assembly assays identified hyperphosphorylation on the N-terminal tail as a critical regulator for sequestration. C-terminal tail phosphorylation and PRMT5-catalyzed arginine methylation enhance nucleosome assembly by promoting histone interaction with the second acidic tract of Npm. Electron microscopy reconstructions of Npm and TTLL4 activity toward the C-terminal tail demonstrate that oocyte- and egg-specific PTMs cause Npm conformational changes. Our results reveal that PTMs regulate Npm chaperoning activity by modulating Npm conformation and Npm-histone interaction, leading to histone sequestration in the egg.

Identifiers

PMID25772360
PMCPMC4567554
OpenAlexW2063686578

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.