Evidence map›Paper›PMID 25770220›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Myosin VI regulates gene pairing and transcriptional pause release in T cells.

Cornelia E Zorca, Lark Kyun Kim, Yoon Jung Kim, Matthew R Krause, Daniel Zenklusen, Charalampos G Spilianakis, Richard A Flavell

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Myosin in chromosome organisation and gene expression.Biochemical Society transactions · 2023
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Regulation of Nuclear Mechanics and the Impact on DNA Damage.International journal of molecular sciences · 2021
    Review
  11. Genome organization: Tag it, move it, place it.Current opinion in cell biology · 2021
    Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. PAR-TERRA directs homologous sex chromosome pairing.Nature structural & molecular biology · 2017
    Article
  19. The X chromosome in space.Nature reviews. Genetics · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Cornelia E ZorcaDepartments of Immunobiology and Genetics, and.
Lark Kyun KimDepartments of Immunobiology and Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06520;
Yoon Jung KimGenetics, and.
Matthew R KrauseMontreal Neurological Institute, McGill University, Montreal, QC H3A 2B4, Canada; and.
Daniel ZenklusenDépartement de Biochimie, Université de Montréal, Montreal, QC H3T 1J4, Canada.
Charalampos G SpilianakisDepartments of Immunobiology and.
Richard A FlavellDepartments of Immunobiology and Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06520; richard.flavell@yale.edu.
Howard Hughes Medical Institute · USMcGill University · CAUniversité de Montréal · CAYale University · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007499 · NIGMS · YALE UNIVERSITY · PI CARLSON, JOHN R, REINKE, VALERIE J · 1985 to 2022
$13.9M
CIHR 111099-1CIHR MOP-BMB-232642Howard Hughes Medical InstituteNIGMS NIH HHS T32 GM007499NIGMS NIH HHS T32-GM07499
6 · The paper itself

Abstract

Naive CD4 T cells differentiate into several effector lineages, which generate a stronger and more rapid response to previously encountered immunological challenges. Although effector function is a key feature of adaptive immunity, the molecular basis of this process is poorly understood. Here, we investigated the spatiotemporal regulation of cytokine gene expression in resting and restimulated effector T helper 1 (Th1) cells. We found that the Lymphotoxin (LT)/TNF alleles, which encode TNF-α, were closely juxtaposed shortly after T-cell receptor (TCR) engagement, when transcription factors are limiting. Allelic pairing required a nuclear myosin, myosin VI, which is rapidly recruited to the LT/TNF locus upon restimulation. Furthermore, transcription was paused at the TNF locus and other related genes in resting Th1 cells and released in a myosin VI-dependent manner following activation. We propose that homologous pairing and myosin VI-mediated transcriptional pause release account for the rapid and efficient expression of genes induced by an external stimulus.

Indexed as

Transcription, GeneticAllelesAnimalsCell NucleusCytokinesIn Situ Hybridization, FluorescenceLymphotoxin-alphaMiceMice, Inbred C57BLMice, KnockoutMyosin Heavy ChainsReceptors, Antigen, T-CellRNA Polymerase IITh1 CellsTumor Necrosis Factor-alphaCytokinesLymphotoxin-alphaMyosin Heavy Chainsmyosin VIReceptors, Antigen, T-CellRNA Polymerase IITumor Necrosis Factor-alphaGRO-seqhomolog pairingmyosin VIpolymerase pausing

Identifiers

PMID25770220
PMCPMC4386387
OpenAlexW1964320423

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.