Evidence map›Paper›PMID 25769831›Full record

ArticleApplied and environmental microbiology2015

Evidence of active methanogen communities in shallow sediments of the sonora margin cold seeps.

Adrien Vigneron, Stéphane L'Haridon, Anne Godfroy, Erwan G Roussel, Barry A Cragg, R John Parkes, Laurent Toffin

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Adrien VigneronIfremer, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France Université de Bretagne Occidentale, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France CNRS, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France School of Civil Engineering and Geosciences, Newcastle University, Newcastle upon Tyne, United Kingdom avignero@gmail.com.ORCID http://orcid.org/0000-0003-3552-8369
Stéphane L'HaridonUniversité de Bretagne Occidentale, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France CNRS, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France.
Anne GodfroyIfremer, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France Université de Bretagne Occidentale, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France CNRS, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France.
Erwan G RousselIfremer, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France Université de Bretagne Occidentale, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France CNRS, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France School of Earth and Ocean Sciences, Cardiff University, Cardiff, United Kingdom.
Barry A CraggSchool of Earth and Ocean Sciences, Cardiff University, Cardiff, United Kingdom.
R John ParkesSchool of Earth and Ocean Sciences, Cardiff University, Cardiff, United Kingdom.
Laurent ToffinIfremer, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France Université de Bretagne Occidentale, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France CNRS, Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197, Technopôle Brest Iroise, Plouzané, France.
Centre National de la Recherche Scientifique · FRCardiff University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the Sonora Margin cold seep ecosystems (Gulf of California), sediments underlying microbial mats harbor high biogenic methane concentrations, fueling various microbial communities, such as abundant lineages of anaerobic methanotrophs (ANME). However, the biodiversity, distribution, and metabolism of the microorganisms producing this methane remain poorly understood. In this study, measurements of methanogenesis using radiolabeled dimethylamine, bicarbonate, and acetate showed that biogenic methane production in these sediments was mainly dominated by methylotrophic methanogenesis, while the proportion of autotrophic methanogenesis increased with depth. Congruently, methane production and methanogenic Archaea were detected in culture enrichments amended with trimethylamine and bicarbonate. Analyses of denaturing gradient gel electrophoresis (DGGE) fingerprinting and reverse-transcribed PCR-amplified 16S rRNA sequences retrieved from these enrichments revealed the presence of active methylotrophic Methanococcoides burtonii relatives and several new autotrophic Methanogenium lineages, confirming the cooccurrence of Methanosarcinales and Methanomicrobiales methanogens with abundant ANME populations in the sediments of the Sonora Margin cold seeps.

Indexed as

ArchaeaBiodiversityCaliforniaGeologic SedimentsMethaneMolecular Sequence DataPhylogenySeawaterMethane

Identifiers

PMID25769831
PMCPMC4407212
OpenAlexW2160133393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.