Evidence map›Paper›PMID 25768430›Full record

ArticlePloS one2015

Quantification of mature microRNAs using pincer probes and real-time PCR amplification.

Tinghua Huang, Jun Yang, Guopin Liu, Wei Jin, Zhi Liu, Shuhong Zhao, Min Yao

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. miRNA in Molecular Diagnostics.Bioengineering (Basel, Switzerland) · 2022
    Review
  2. MicroRNA-Based Diagnosis and Therapy.International journal of molecular sciences · 2022
    Review
  3. Review
  4. MicroRNA amplification and detection technologies: opportunities and challenges for point of care diagnostics.Laboratory investigation; a journal of technical methods and pathology · 2019
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tinghua HuangBlack Pig Research Institute, Yangtze University, Jingzhou, Hubei, China; College of Animal Science, Yangtze University, Jingzhou, Hubei, China.
Jun YangCollege of Animal Science, Yangtze University, Jingzhou, Hubei, China.
Guopin LiuBlack Pig Research Institute, Yangtze University, Jingzhou, Hubei, China; College of Animal Science, Yangtze University, Jingzhou, Hubei, China.
Wei JinBlack Pig Research Institute, Yangtze University, Jingzhou, Hubei, China.
Zhi LiuCollege of Animal Science, Yangtze University, Jingzhou, Hubei, China.
Shuhong ZhaoKey Laboratory of Agricultural Animal Genetics, Breeding, and Reproduction of Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei, China.
Min YaoCollege of Animal Science, Yangtze University, Jingzhou, Hubei, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The robust and reliable detection of small microRNAs (miRNAs) is important to understand the functional significance of miRNAs. Several methods can be used to quantify miRNAs. Selectively quantifying mature miRNAs among miRNA precursors, pri-miRNAs, and other miRNA-like sequences is challenging because of the short length of miRNAs. In this study, we developed a two-step miRNA quantification system based on pincer probe capture and real-time PCR amplification. The performance of the method was tested using synthetic mature miRNAs and clinical RNA samples. Results showed that the method demonstrated dynamic range of seven orders of magnitude and sensitivity of detection of hundreds of copies of miRNA molecules. The use of pincer probes allowed excellent discrimination of mature miRNAs from their precursors with five Cq (quantification cycle) values difference. The developed method also showed good discrimination of highly homologous family members with cross reaction less than 5%. The pincer probe-based approach is a potential alternative to currently used methods for mature miRNA quantification.

Indexed as

AnimalsDNA ProbesMicroRNAsReal-Time Polymerase Chain ReactionReverse TranscriptionSwineDNA ProbesMicroRNAs

Identifiers

PMID25768430
PMCPMC4359002

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.