Evidence map›Paper›PMID 25768119›Full record

ArticlePLoS genetics2015

A zinc finger motif-containing protein is essential for chloroplast RNA editing.

Tao Sun, Xiaowen Shi, Giulia Friso, Klaas Van Wijk, Stephane Bentolila, Maureen R Hanson

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 135 citations in OpenAlex.

  1. Article
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  13. Article
  14. Review
  15. Plant organellar RNA maturation.The Plant cell · 2023
    Review
  16. Article
  17. The ATP Synthase γ Subunit ATPC1 Regulates RNA Editing in Chloroplasts.International journal of molecular sciences · 2023
    Article
  18. Isolation and Characterization ofPlants (Basel, Switzerland) · 2023
    Article
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Tao SunDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Xiaowen ShiDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Giulia FrisoSection of Plant Biology, Cornell University, Ithaca, New York, United States of America.
Klaas Van WijkSection of Plant Biology, Cornell University, Ithaca, New York, United States of America.
Stephane BentolilaDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Maureen R HansonDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Cornell University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

C-to-U editing of transcripts in plant organelles is carried out by small (<400 kD) protein complexes called editosomes. Recognition of the proper C target for editing is mediated by pentatricopeptide repeat (PPR) containing proteins that recognize cis-elements. Members of two additional gene families, the RIP/MORF and ORRM families, have each been found to be required for editing of particular sets of Cs in mitochondria and/or chloroplasts. By co-immunoprecipitation of the chloroplast editing factor ORRM1, followed by mass spectrometry, we have now identified a member of the RanBP2 type zinc fingers (pFAM00641) protein family that is required for editing of 14 sites in chloroplasts and affects editing efficiency of another 16 chloroplast C targets. In yeast two-hybrid assays, OZ1 (Organelle Zinc finger 1) interacts with PPR site recognition factors whose cognate sites are affected when OZ1 is mutated. No interaction of OZ1 with the chloroplast editing factors RIP2 and RIP9 was detected; however, OZ1 interacts with ORRM1, which binds to RIP proteins, allowing us to build a model for the chloroplast RNA editosome. The RNA editosomes that act upon most chloroplast C targets are likely to contain a PPR protein recognition factor, either RIP2 or RIP9, ORRM1, and OZ1. The organelle zinc finger editing factor family (OZ) contains 4 members in Arabidopsis, three that are predicted to be targeted to chloroplasts and one to mitochondria. With the identification of OZ1, there are now 4 nuclear-encoded protein families known to be essential for plant organelle RNA editing.

Indexed as

RNA EditingAmino Acid SequenceArabidopsisCarrier ProteinsChloroplastsIntracellular Signaling Peptides and ProteinsMass SpectrometryMolecular Sequence DataCarrier ProteinsIntracellular Signaling Peptides and ProteinsVAR3 protein, Arabidopsis

Identifiers

PMID25768119
PMCPMC4359148
OpenAlexW2071732140

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.