Evidence map›Paper›PMID 25767889›Full record

ArticlePloS one2015

TORC1 promotes phosphorylation of ribosomal protein S6 via the AGC kinase Ypk3 in Saccharomyces cerevisiae.

Asier González, Mitsugu Shimobayashi, Tobias Eisenberg, David Adrian Merle, Tobias Pendl, Michael N Hall, Tarek Moustafa

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 102 citations in OpenAlex.

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  9. Tspo Depletion Exacerbates Steatosis Through Fatty Acid Uptake.Journal of cellular and molecular medicine · 2025
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Asier GonzálezBiozentrum, University of Basel, Basel, Switzerland.
Mitsugu ShimobayashiBiozentrum, University of Basel, Basel, Switzerland.
Tobias EisenbergInstitute of Molecular Biosciences, University of Graz, Graz, Austria.
David Adrian MerleInstitute of Molecular Biosciences, University of Graz, Graz, Austria.
Tobias PendlInstitute of Molecular Biosciences, University of Graz, Graz, Austria.
Michael N HallBiozentrum, University of Basel, Basel, Switzerland.
Tarek MoustafaInstitute of Molecular Biosciences, University of Graz, Graz, Austria.
University of Graz · ATUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The target of rapamycin complex 1 (TORC1) is an evolutionarily conserved sensor of nutrient availability. Genetic and pharmacological studies in the yeast Saccharomyces cerevisiae have provided mechanistic insights on the regulation of TORC1 signaling in response to nutrients. Using a highly specific antibody that recognizes phosphorylation of the bona fide TORC1 target ribosomal protein S6 (Rps6) in yeast, we found that nutrients rapidly induce Rps6 phosphorylation in a TORC1-dependent manner. Moreover, we demonstrate that Ypk3, an AGC kinase which exhibits high homology to human S6 kinase (S6K), is required for the phosphorylation of Rps6 in vivo. Rps6 phosphorylation is completely abolished in cells lacking Ypk3 (ypk3Δ), whereas Sch9, previously reported to be the yeast ortholog of S6K, is dispensable for Rps6 phosphorylation. Phosphorylation-deficient mutations in regulatory motifs of Ypk3 abrogate Rps6 phosphorylation, and complementation of ypk3Δ cells with human S6 kinase restores Rps6 phosphorylation in a rapamycin-sensitive manner. Our findings demonstrate that Ypk3 is a critical component of the TORC1 pathway and that the use of a phospho-S6 specific antibody offers a valuable tool to identify new nutrient-dependent and rapamycin-sensitive targets in vivo.

Indexed as

Analysis of VarianceCyclic Nucleotide-Regulated Protein KinasesEscherichia coliImmunoblottingPhosphorylationPlasmidsPolymerase Chain ReactionProtein Serine-Threonine KinasesRibosomal Protein S6 KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsCyclic Nucleotide-Regulated Protein KinasesProtein Serine-Threonine KinasesRibosomal Protein S6 KinasesSaccharomyces cerevisiae ProteinsTORC1 protein complex, S cerevisiaeTranscription FactorsYpk3 protein, S cerevisiae

Identifiers

PMID25767889
PMCPMC4359079
OpenAlexW1975058667

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.