Evidence map›Paper›PMID 25767240›Full record

ArticleGenome announcements2015

Complete genomic sequence for an avian group G rotavirus from South Africa.

Karla M Stucker, Timothy B Stockwell, Martin M Nyaga, Rebecca A Halpin, Nadia Fedorova, Asmik Akopov, Harry Ngoveni, Ina Peenze, Mapaseka L Seheri, M Jeffrey Mphahlele and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome announcements, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Rotavirus F and G circulating in chickens in Southeastern Brazil.Tropical animal health and production · 2022
    Article
  3. Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P[6] strains circulating in Africa.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2018
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Karla M StuckerJ. Craig Venter Institute, Rockville, Maryland, USA.
Timothy B StockwellJ. Craig Venter Institute, Rockville, Maryland, USA.
Martin M NyagaSouth African Medical Research Council, Diarrhoeal Pathogens Research Unit (MRC-DPRU), Faculty of Health Sciences, Sefako Makgatho Health Sciences University, MEDUNSA, Pretoria, South Africa.
Rebecca A HalpinJ. Craig Venter Institute, Rockville, Maryland, USA.
Nadia FedorovaJ. Craig Venter Institute, Rockville, Maryland, USA.
Asmik AkopovJ. Craig Venter Institute, Rockville, Maryland, USA.
Harry NgoveniSouth African Medical Research Council, Diarrhoeal Pathogens Research Unit (MRC-DPRU), Faculty of Health Sciences, Sefako Makgatho Health Sciences University, MEDUNSA, Pretoria, South Africa.
Ina PeenzeSouth African Medical Research Council, Diarrhoeal Pathogens Research Unit (MRC-DPRU), Faculty of Health Sciences, Sefako Makgatho Health Sciences University, MEDUNSA, Pretoria, South Africa.
Mapaseka L SeheriSouth African Medical Research Council, Diarrhoeal Pathogens Research Unit (MRC-DPRU), Faculty of Health Sciences, Sefako Makgatho Health Sciences University, MEDUNSA, Pretoria, South Africa.
M Jeffrey MphahleleSouth African Medical Research Council, Diarrhoeal Pathogens Research Unit (MRC-DPRU), Faculty of Health Sciences, Sefako Makgatho Health Sciences University, MEDUNSA, Pretoria, South Africa.
David E WentworthJ. Craig Venter Institute, Rockville, Maryland, USA dwentworth@cdc.gov.

Funding

NIAID NIH HHS HHSN272200900007C
6 · The paper itself

Abstract

We report the first complete sequence for an avian group G rotavirus (RVG) genome from Africa, which is the third publically available RVG genome. These RVG genomes are highly diverse, especially in their VP4, VP7, NSP4, and NSP3 segments, indicating that RVG diversity is comparable to that of rotavirus A.

Identifiers

PMID25767240
PMCPMC4357762

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.