Evidence map›Paper›PMID 25765337›Full record

ArticleMolecular plant pathology2015

Transcriptome analysis highlights preformed defences and signalling pathways controlled by the prAe1 quantitative trait locus (QTL), conferring partial resistance to Aphanomyces euteiches in Medicago truncatula.

Yacine Badis, Maxime Bonhomme, Claude Lafitte, Stéphanie Huguet, Sandrine Balzergue, Bernard Dumas, Christophe Jacquet

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant pathology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Aphanomyces euteiches causes disease in Lathyrus sativus with a globally diverse, polygenic resistance landscape.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  2. Article
  3. QTL combinations associated with field partial resistance to Aphanomyces root rot in pea near-isogenic lines.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  4. Article
  5. Article
  6. The mycoparasiteFrontiers in plant science · 2023
    Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Frontiers in plant science · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yacine BadisLaboratoire de Recherche en Sciences Végétales, UPS, Université de Toulouse, BP42617, Auzeville, F-31326, Castanet-Tolosan, France.
Maxime BonhommeLaboratoire de Recherche en Sciences Végétales, UPS, Université de Toulouse, BP42617, Auzeville, F-31326, Castanet-Tolosan, France.
Claude LafitteLaboratoire de Recherche en Sciences Végétales, UPS, Université de Toulouse, BP42617, Auzeville, F-31326, Castanet-Tolosan, France.
Stéphanie HuguetUnité de Recherche en Génomique Végétale (URGV), UMR INRA 1165-Université d'Evry Val d'Essonne-ERL CNRS 8196, CP 5708, F-91057, Evry Cedex, France.
Sandrine BalzergueUnité de Recherche en Génomique Végétale (URGV), UMR INRA 1165-Université d'Evry Val d'Essonne-ERL CNRS 8196, CP 5708, F-91057, Evry Cedex, France.
Bernard DumasLaboratoire de Recherche en Sciences Végétales, UPS, Université de Toulouse, BP42617, Auzeville, F-31326, Castanet-Tolosan, France.
Christophe JacquetLaboratoire de Recherche en Sciences Végétales, UPS, Université de Toulouse, BP42617, Auzeville, F-31326, Castanet-Tolosan, France.
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To gain an insight into the molecular mechanisms of quantitative disease resistance in Medicago truncatula to the root-infecting oomycete Aphanomyces euteiches, we selected two near-isogenic lines (NILs), NR and NS, partially resistant and susceptible, respectively, differing in the allelic state of the quantitative resistance locus (QRL) prAe1 (partially resistant to A. euteiches 1). Complementary molecular and cytological phenotyping methods showed that prAe1 alone confers quantitative resistance to A. euteiches. Root and stem tissues were colonized in NS plants and 80% of NS plants died by 21 days post-inoculation (dpi). In contrast, A. euteiches mycelium was restricted to the root cortex and the spread of symptoms was arrested in aerial parts of NR plants. A transcriptome analysis performed at 0, 1 and 6 dpi identified 1198 differentially expressed genes (DEGs) between NR and NS lines. More than 87% of the DEGs were significantly more expressed in NR. The highest number of DEGs was found in control conditions, with 723 genes over-expressed in NR versus 85 in NS. Genes belonging to secondary metabolism, pathogenesis-related (PR) proteins and kinases were significantly enriched. The significant role of the flavonoid pathway in resistance was corroborated by the detection of larger amounts of flavonoids in NR roots and the inhibition of A. euteiches zoospore germination by 2'-O-methyl-isoliquiritigenin, a compound synthesized by enzymes specifically induced in NR. Our study revealed that prAe1-dependent resistance relies mainly on the constitutive expression of defence-related pathways and signalling elements, which can be re-amplified in later time points of the infection.

Indexed as

Genes, PlantQuantitative Trait LociAphanomycesGene Expression ProfilingMedicago truncatulaPlant DiseasesSignal TransductionAphanomycesflavonoidlegumeoomycetepartial resistancesecondary metabolism

Identifiers

PMID25765337
PMCPMC6638387
OpenAlexW1541846552

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.