Evidence map›Paper›PMID 25765081›Full record

ArticleBMC genomics2015

RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis.

Robert A Walker, Philippa A Sharman, Catherine M Miller, Christoph Lippuner, Michal Okoniewski, Ramon M Eichenberger, Chandra Ramakrishnan, Fabien Brossier, Peter Deplazes, Adrian B Hehl and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 156 citations in OpenAlex.

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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Robert A WalkerQueensland Tropical Health Alliance Research Laboratory, Australian Institute of Tropical Health and Medicine, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. robert.walker1@jcu.edu.au.
Philippa A SharmanCollege of Public Health, Medical and Veterinary Sciences, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. philippasharman@gmail.com.
Catherine M MillerCollege of Public Health, Medical and Veterinary Sciences, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. kate.miller1@jcu.edu.au.
Christoph LippunerInstitute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. christoph.lippuner@dkf.unibe.ch.
Michal OkoniewskiFunctional Genomics Center Zurich, Winterthurerstrasse, CH-8057, Zürich, Switzerland. michal.okoniewski@gmail.com.
Ramon M EichenbergerInstitute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. ramon.eichenberger@uzh.ch.
Chandra RamakrishnanInstitute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. chandra.ramakrishnan@uzh.ch.
Fabien BrossierApicomplexes et Immunité Mucosale, INRA, UMR1282, Infectiologie et Santé Publique, F-37380, Nouzilly, France. nicholas.smith@jcu.edu.au.
Peter DeplazesInstitute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. deplazesp@access.uzh.ch.
Adrian B HehlInstitute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. adrian.hehl@uzh.ch.
Nicholas C SmithQueensland Tropical Health Alliance Research Laboratory, Australian Institute of Tropical Health and Medicine, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. nicholas.smith@jcu.edu.au.
ZHAW Zurich University of Applied Sciences · CHJames Cook University · AUAustralian Institute of Tropical Health and Medicine · AUUniversité de Tours · FRUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe protozoan Eimeria tenella is a common parasite of chickens, causing avian coccidiosis, a disease of on-going concern to agricultural industries. The high prevalence of E. tenella can be attributed to the resilient oocyst stage, which is transmitted between hosts in the environment. As in related Coccidia, development of the eimerian oocyst appears to be dependent on completion of the parasite's sexual cycle. RNA Seq transcriptome profiling offers insights into the mechanisms governing the biology of E. tenella sexual stages (gametocytes) and the potential to identify targets for blocking parasite transmission.

resultsComparisons between the sequenced transcriptomes of E. tenella gametocytes and two asexual developmental stages, merozoites and sporozoites, revealed upregulated gametocyte transcription of 863 genes. Many of these genes code for proteins involved in coccidian sexual biology, such as oocyst wall biosynthesis and fertilisation, and some of these were characterised in more depth. Thus, macrogametocyte-specific expression and localisation was confirmed for two proteins destined for incorporation into the oocyst wall, as well as for a subtilisin protease and an oxidoreductase. Homologues of an oocyst wall protein and oxidoreductase were found in the related coccidian, Toxoplasma gondii, and shown to be macrogametocyte-specific. In addition, a microgametocyte gamete fusion protein, EtHAP2, was discovered.

conclusionsThe need for novel vaccine candidates capable of controlling coccidiosis is rising and this panel of gametocyte targets represents an invaluable resource for development of future strategies to interrupt parasite transmission, not just in Eimeria but in other Coccidia, including Toxoplasma, where transmission blocking is a relatively unexplored strategy.

Indexed as

TranscriptomeAmino Acid SequenceAnimalsChickensCoccidiosisEimeria tenellaGenome, ProtozoanMerozoitesMicroscopy, FluorescenceMolecular Sequence DataOocystsOxidoreductasesProtozoan ProteinsRecombinant ProteinsRNASequence AlignmentOxidoreductasesProtozoan ProteinsRecombinant ProteinsRNA

Identifiers

PMID25765081
PMCPMC4345034
OpenAlexW1964410750

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.