Evidence map›Paper›PMID 25764536›Full record

ArticleFEMS microbiology ecology2015

Microbial community composition and diversity in Caspian Sea sediments.

Nagissa Mahmoudi, Michael S Robeson, Hector F Castro, Julian L Fortney, Stephen M Techtmann, Dominique C Joyner, Charles J Paradis, Susan M Pfiffner, Terry C Hazen

Abstract read
In one paragraph

Article in FEMS microbiology ecology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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  7. Caspian Sea Mycosands: The Variety and Abundance of Medically Important Fungi in Beach Sand and Water.International journal of environmental research and public health · 2022
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  15. The Majority of ActiveFrontiers in microbiology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nagissa MahmoudiDepartment of Civil and Environmental Engineering, University of Tennessee, 37996-2313 Knoxville, TN Center for Environmental Biotechnology, University of Tennessee, 37996-1605 Knoxville, TN nagissa.m@gmail.com.
Michael S RobesonBioSciences Division, Oak Ridge National Laboratory, 37831-6038 Oak Ridge, TN.
Hector F CastroDepartment of Chemistry, University of Tennessee, 37996-1600 Knoxville, TN.
Julian L FortneyDepartment of Civil and Environmental Engineering, University of Tennessee, 37996-2313 Knoxville, TN Center for Environmental Biotechnology, University of Tennessee, 37996-1605 Knoxville, TN.
Stephen M TechtmannDepartment of Civil and Environmental Engineering, University of Tennessee, 37996-2313 Knoxville, TN Center for Environmental Biotechnology, University of Tennessee, 37996-1605 Knoxville, TN.
Dominique C JoynerDepartment of Civil and Environmental Engineering, University of Tennessee, 37996-2313 Knoxville, TN Center for Environmental Biotechnology, University of Tennessee, 37996-1605 Knoxville, TN.
Charles J ParadisDepartment of Earth and Planetary Sciences, University of Tennessee, 37996-1410 Knoxville, TN.
Susan M PfiffnerCenter for Environmental Biotechnology, University of Tennessee, 37996-1605 Knoxville, TN.
Terry C HazenDepartment of Civil and Environmental Engineering, University of Tennessee, 37996-2313 Knoxville, TN BioSciences Division, Oak Ridge National Laboratory, 37831-6038 Oak Ridge, TN Center for Environmental Biotechnology, University of Tennessee, 37996-1605 Knoxville, TN Department of Earth and Planetary Sciences, University of Tennessee, 37996-1410 Knoxville, TN Department of Microbiology, University of Tennessee, 37996-0845 Knoxville, TN.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Caspian Sea is heavily polluted due to industrial and agricultural effluents as well as extraction of oil and gas reserves. Microbial communities can influence the fate of contaminants and nutrients. However, insight into the microbial ecology of the Caspian Sea significantly lags behind other marine systems. Here we describe microbial biomass, diversity and composition in sediments collected from three sampling stations in the Caspian Sea. Illumina sequencing of 16S rRNA genes revealed the presence of a number of known bacterial and archaeal heterotrophs suggesting that organic carbon is a primary factor shaping microbial communities. Surface sediments collected from bottom waters with low oxygen levels were dominated by Gammaproteobacteria while surface sediments collected from bottom waters under hypoxic conditions were dominated by Deltaproteobacteria, specifically sulfate-reducing bacteria. Thaumarchaeota was dominant across all surface sediments indicating that nitrogen cycling in this system is strongly influenced by ammonia-oxidizing archaea. This study provides a baseline assessment that may serve as a point of reference as this system changes or as the efficacy of new remediation efforts are implemented.

Indexed as

BiodiversityWater PollutionArchaeaBacteriaBase SequenceBiomassDNA, ArchaealDNA, BacterialEcologyGeologic SedimentsMicrobial ConsortiaOceans and SeasRNA, Ribosomal, 16SSequence Analysis, DNADNA, ArchaealDNA, BacterialRNA, Ribosomal, 16SarchaeabacteriaCaspian SeaIlluminamarine sedimentsPLFA

Identifiers

PMID25764536
PMCPMC4399438

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.