Evidence map›Paper›PMID 25764116›Full record

ArticleGenes and immunity2015

Diagnostic value of blood gene expression signatures in active tuberculosis in Thais: a pilot study.

N Satproedprai, N Wichukchinda, S Suphankong, W Inunchot, T Kuntima, S Kumpeerasart, S Wattanapokayakit, S Nedsuwan, H Yanai, K Higuchi and 2 more

Open access · bronzeAbstract readClinical Study
PubMed Publisher
In one paragraph

Article in Genes and immunity, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 2 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 2 syntheses or guidelines pooled it, 35 citations in OpenAlex.

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  20. A Common Variant ofDisease markers · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

N SatproedpraiDepartment of Medical Sciences, Medical Genetics Center, Medical Life Sciences Institute, Ministry of Public Health, Nonthaburi, Thailand.
N WichukchindaDepartment of Medical Sciences, Medical Genetics Center, Medical Life Sciences Institute, Ministry of Public Health, Nonthaburi, Thailand.
S SuphankongDepartment of Medical Sciences, Medical Genetics Center, Medical Life Sciences Institute, Ministry of Public Health, Nonthaburi, Thailand.
W InunchotDepartment of Medical Sciences, Medical Genetics Center, Medical Life Sciences Institute, Ministry of Public Health, Nonthaburi, Thailand.
T KuntimaTB/HIV Research Foundation, Chiangrai, Thailand.
S KumpeerasartDepartment of Medical Sciences, Medical Genetics Center, Medical Life Sciences Institute, Ministry of Public Health, Nonthaburi, Thailand.
S WattanapokayakitDepartment of Medical Sciences, Medical Genetics Center, Medical Life Sciences Institute, Ministry of Public Health, Nonthaburi, Thailand.
S NedsuwanDepartment of Medical Services, Chiangrai Hospital, Chiangrai, Thailand.
H YanaiDepartment of Clinical Laboratory, Fukujuji Hospital, Tokyo, Japan.
K Higuchi1] Japan Anti Tuberculosis Association, Research Institute of Tuberculosis, Tokyo, Japan [2] Research Institute of Immune Diagnosis, Tokyo, Japan.
N Harada1] Japan Anti Tuberculosis Association, Research Institute of Tuberculosis, Tokyo, Japan [2] Research Institute of Immune Diagnosis, Tokyo, Japan.
S MahasirimongkolDepartment of Medical Sciences, Medical Genetics Center, Medical Life Sciences Institute, Ministry of Public Health, Nonthaburi, Thailand.
Ministry of Public Health · THDepartment of Medical Sciences · THJapan Anti Tuberculosis Association · JPFukujuji Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tuberculosis (TB) is a major global health problem. Routine laboratory tests or newly developed molecular detection are limited to the quality of sputum sample. Here we selected genes specific to TB by a minimum redundancy-maximum relevancy package using publicly available microarray data and determine level of selected genes in blood collected from a Thai TB cohort of 40 active TB patients, 38 healthy controls and 18 previous TB patients using quantitative real-time PCR. FCGR1A, FCGR1B variant 1, FCGR1B variant 2, APOL1, GBP5, PSTPIP2, STAT1, KCNJ15, MAFB and KAZN had significantly higher expression level in active TB individuals as compared with healthy controls and previous TB cases (P<0.01). A mathematical method was applied to calculate TB predictive score, which contains the level of expression of seven genes and this score can identify active TB cases with 82.5% sensitivity and 100% specificity as compared with conventional culture confirmation. In addition, TB predictive scores in active TB patients were reduced to normal after completion of standard short-course therapy, which was mostly in concordant with the disease outcome. These finding suggested that blood gene expression measurement and TB Sick Score could have potential value in terms of diagnosis of TB and anti-TB treatment monitoring.

Indexed as

AdultAgedAntitubercular AgentsApolipoprotein L1ApolipoproteinsBlood ProteinsCase-Control StudiesFemaleGene Expression ProfilingHumansLipoproteins, HDLMafB Transcription FactorMaleMiddle AgedPilot ProjectsReceptors, IgGAntitubercular AgentsAPOL1 protein, humanApolipoprotein L1ApolipoproteinsBlood ProteinsFCGR1A protein, humanLipoproteins, HDLMAFB protein, humanMafB Transcription FactorReceptors, IgGSTAT1 protein, humanSTAT1 Transcription Factor

Identifiers

PMID25764116
OpenAlexW2022439949

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.