Evidence map›Paper›PMID 25762628›Full record

ArticleOncotarget2015

TP53 intron 1 hotspot rearrangements are specific to sporadic osteosarcoma and can cause Li-Fraumeni syndrome.

Sebastian Ribi, Daniel Baumhoer, Kristy Lee, Edison, Audrey S M Teo, Babita Madan, Kang Zhang, Wendy K Kohlmann, Fei Yao, Wah Heng Lee and 11 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 69 citations in OpenAlex.

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  17. Li-Fraumeni syndrome heterogeneity.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 4 countries.

Sebastian RibiCancer Therapeutics & Stratified Oncology, Genome Institute of Singapore, Singapore 138672, Singapore.
Daniel BaumhoerBone Tumor Reference Center at The Institute of Pathology, University Hospital Basel, CH-4003 Basel, Switzerland.
Kristy LeeDepartment of Pediatrics and Oncological Sciences, Huntsman Cancer Institute, University of Utah, Salt Lake City, UT 84112, USA.
EdisonDuke-NUS Graduate Medical School Singapore, Singapore 169857, Singapore.
Audrey S M TeoCancer Therapeutics & Stratified Oncology, Genome Institute of Singapore, Singapore 138672, Singapore.
Babita MadanDuke-NUS Graduate Medical School Singapore, Singapore 169857, Singapore.
Kang ZhangInstitute for Genomic Medicine, UC San Diego, La Jolla, CA 92830, USA.
Wendy K KohlmannHuntsman Cancer Institute, University of Utah Health Care, Utah, UT 84112, USA.
Fei YaoCancer Therapeutics & Stratified Oncology, Genome Institute of Singapore, Singapore 138672, Singapore.
Wah Heng LeeComputational & Systems Biology, Genome Institute of Singapore, Singapore 138672, Singapore.
Qiangze HoiComputational & Systems Biology, Genome Institute of Singapore, Singapore 138672, Singapore.
Shaojiang CaiComputational & Systems Biology, Genome Institute of Singapore, Singapore 138672, Singapore.
Xing Yi WooPersonal Genomics Solutions, Genome Institute of Singapore, Singapore 138672, Singapore.
Patrick TanCancer Therapeutics & Stratified Oncology, Genome Institute of Singapore, Singapore 138672, Singapore.
Gernot JundtBone Tumor Reference Center at The Institute of Pathology, University Hospital Basel, CH-4003 Basel, Switzerland.
Jan SmidaClinical Cooperation Group Osteosarcoma, Helmholtz Zentrum Muenchen, German Research Center for Environmental Health, 85764 Neuherberg, Germany.
Michaela NathrathClinical Cooperation Group Osteosarcoma, Helmholtz Zentrum Muenchen, German Research Center for Environmental Health, 85764 Neuherberg, Germany.
Wing-Kin SungComputational & Systems Biology, Genome Institute of Singapore, Singapore 138672, Singapore.
Joshua D SchiffmanDepartment of Pediatrics and Oncological Sciences, Huntsman Cancer Institute, University of Utah, Salt Lake City, UT 84112, USA.
David M VirshupDuke-NUS Graduate Medical School Singapore, Singapore 169857, Singapore.
Axel M HillmerCancer Therapeutics & Stratified Oncology, Genome Institute of Singapore, Singapore 138672, Singapore.
Genome Institute of Singapore · SGDuke-NUS Medical School · SGHelmholtz Zentrum München · DEUniversity Hospital of Basel · CHHuntsman Cancer Institute · USUniversity of California, San Diego · USUniversity of Utah · USUniversity of Utah Health Care · US

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
NCI NIH HHS P30 CA042014
6 · The paper itself

Abstract

Somatic mutations of TP53 are among the most common in cancer and germline mutations of TP53 (usually missense) can cause Li-Fraumeni syndrome (LFS). Recently, recurrent genomic rearrangements in intron 1 of TP53 have been described in osteosarcoma (OS), a highly malignant neoplasm of bone belonging to the spectrum of LFS tumors. Using whole-genome sequencing of OS, we found features of TP53 intron 1 rearrangements suggesting a unique mechanism correlated with transcription. Screening of 288 OS and 1,090 tumors of other types revealed evidence for TP53 rearrangements in 46 (16%) OS, while none were detected in other tumor types, indicating this rearrangement to be highly specific to OS. We revisited a four-generation LFS family where no TP53 mutation had been identified and found a 445 kb inversion spanning from the TP53 intron 1 towards the centromere. The inversion segregated with tumors in the LFS family. Cancers in this family had loss of heterozygosity, retaining the rearranged allele and resulting in TP53 expression loss. In conclusion, intron 1 rearrangements cause p53-driven malignancies by both germline and somatic mechanisms and provide an important mechanism of TP53 inactivation in LFS, which might in part explain the diagnostic gap of formerly classified "TP53 wild-type" LFS.

Indexed as

Genes, p53IntronsAdolescentAdultAgedAged, 80 and overBase SequenceBone NeoplasmsChildChild, PreschoolGene RearrangementGenetic Predisposition to DiseaseGerm-Line MutationHumansLi-Fraumeni SyndromeMalecancer genomicsLi-Fraumeni syndromeosteosarcomastructural variationsTP53

Identifiers

PMID25762628
PMCPMC4480712
OpenAlexW1941647266

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.