Evidence map›Paper›PMID 25762332›Full record

ArticleBiophysical journal2015

Room-temperature distance measurements of immobilized spin-labeled protein by DEER/PELDOR.

Virginia Meyer, Michael A Swanson, Laura J Clouston, Przemysław J Boratyński, Richard A Stein, Hassane S Mchaourab, Andrzej Rajca, Sandra S Eaton, Gareth R Eaton

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
24.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 102 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Cucurbit[7]uril Enhances Distance Measurements of Spin-Labeled Proteins.Journal of the American Chemical Society · 2023
    Article
  5. Synthesis and Properties of (1International journal of molecular sciences · 2023
    Article
  6. Article
  7. A newJournal of magnetic resonance (San Diego, Calif. : 1997) · 2023
    Article
  8. Review
  9. Article
  10. Review
  11. PELDOR Measurements on Nitroxide-Labeled Oligonucleotides.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. ChemistryOpen · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Virginia MeyerDepartment of Chemistry and Biochemistry, University of Denver, Denver, Colorado.
Michael A SwansonDepartment of Chemistry and Biochemistry, University of Denver, Denver, Colorado.
Laura J CloustonDepartment of Chemistry, University of Nebraska, Lincoln, Nebraska.
Przemysław J BoratyńskiDepartment of Chemistry, University of Nebraska, Lincoln, Nebraska.
Richard A SteinDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, Tennessee.
Hassane S MchaourabDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, Tennessee.
Andrzej RajcaDepartment of Chemistry, University of Nebraska, Lincoln, Nebraska.
Sandra S EatonDepartment of Chemistry and Biochemistry, University of Denver, Denver, Colorado.
Gareth R EatonDepartment of Chemistry and Biochemistry, University of Denver, Denver, Colorado. Electronic address: geaton@du.edu.
University of Denver · USUniversity of Nebraska–Lincoln · USVanderbilt University · US

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI ROUX, BENOIT · 2010 to 2017
$31.9M
Midwest Center for Membrane Protein Structural DynamicsR24GM084757 · NIGMS · UNIVERSITY OF CHICAGO · PI PEROZO, EDUARDO A · 2008 to 2008
$77k
NIGMS NIH HHS R24 GM084757NIGMS NIH HHS U54 GM084757NIGMS NIH HHS U54 GM087519
6 · The paper itself

Abstract

Nitroxide spin labels are used for double electron-electron resonance (DEER) measurements of distances between sites in biomolecules. Rotation of gem-dimethyls in commonly used nitroxides causes spin echo dephasing times (Tm) to be too short to perform DEER measurements at temperatures between ∼80 and 295 K, even in immobilized samples. A spirocyclohexyl spin label has been prepared that has longer Tm between 80 and 295 K in immobilized samples than conventional labels. Two of the spirocyclohexyl labels were attached to sites on T4 lysozyme introduced by site-directed spin labeling. Interspin distances up to ∼4 nm were measured by DEER at temperatures up to 160 K in water/glycerol glasses. In a glassy trehalose matrix the Tm for the doubly labeled T4 lysozyme was long enough to measure an interspin distance of 3.2 nm at 295 K, which could not be measured for the same protein labeled with the conventional 1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-(methyl)methanethio-sulfonate label.

Indexed as

Spin LabelsElectron Spin Resonance SpectroscopyEnzymes, ImmobilizedMuramidaseTemperatureViral ProteinsEnzymes, ImmobilizedMuramidaseSpin LabelsViral Proteins

Identifiers

PMID25762332
PMCPMC4375670
OpenAlexW2156063104

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.