ArticlePlant physiology2015
Multiomics in grape berry skin revealed specific induction of the stilbene synthetic pathway by ultraviolet-C irradiation.
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Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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34 citing papers in PubMed, 65 citations in OpenAlex.
- Tailored UV-A Irradiation and Callus Selection Enable Distinct Flavonoid Profile Production in Grape Cell Cultures.Foods (Basel, Switzerland) · 2026Article
- Genomic resources and genetic improvement of vital tropical and subtropical fruit crops: current status and prospects.AoB PLANTS · 2025Review
- Development of phytochemical genomics: From decoding metabolome to functional genomics and biotechnology of plant metabolism.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025Review
- Novel Targets for Fruit Conservation Strategies Revealed by Omics Studies: A Systematic Review and Meta-Analysis.International journal of food science · 2025Review
- Transcriptomic Analysis Reveals Novel Regulators of the Scots Pine Stilbene Pathway.Plant & cell physiology · 2023Article
- MYB30 and MYB14 form a repressor-activator module with WRKY8 that controls stilbene biosynthesis in grapevine.The Plant cell · 2023Article
- Effect of Light Quality on Metabolomic, Ionomic, and Transcriptomic Profiles in Tomato Fruit.International journal of molecular sciences · 2022Article
- Transcriptomic and metabolomic integration as a resource in grapevine to study fruit metabolite quality traits.Frontiers in plant science · 2022Article
- Morphophysiological and Proteomic Responses on Plants of Irradiation with Electromagnetic Waves.International journal of molecular sciences · 2021Review
- Adjustment of KInternational journal of molecular sciences · 2021Review
- Review
- Impact of Environmental Factors on Stilbene Biosynthesis.Plants (Basel, Switzerland) · 2021Review
- Transcriptomic and Weighted Gene Co-expression Correlation Network Analysis Reveal Resveratrol Biosynthesis Mechanisms Caused by Bud Sport in Grape Berry.Frontiers in plant science · 2021Article
- Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality.BMC genomics · 2020Article
- Lignin and Quercetin Synthesis Underlies Berry Russeting in 'Sunshine Muscat' Grape.Biomolecules · 2020Article
- Comparative physiological, metabolomic, and transcriptomic analyses reveal developmental stage-dependent effects of cluster bagging on phenolic metabolism in Cabernet Sauvignon grape berries.BMC plant biology · 2019Article
- Molecular Analysis of UV-C Induced Resveratrol Accumulation inInternational journal of molecular sciences · 2019Article
- NMR-Based Tissular and Developmental Metabolomics of Tomato Fruit.Metabolites · 2019Article
- The Role of UV-B light on Small RNA Activity During Grapevine Berry Development.G3 (Bethesda, Md.) · 2019Article
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Authors and funding
13 authors at 9 institutions in 3 countries.
Mami SuzukiGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Ryo NakabayashiGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Yoshiyuki OgataGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Nozomu SakuraiGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Toshiaki TokimatsuGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Susumu GotoGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Makoto SuzukiGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Michal JasinskiGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Enrico MartinoiaGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Shungo OtagakiGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Shogo MatsumotoGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Kazuki SaitoGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.).
Katsuhiro ShiratakeGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan (Mam.S., S.O., S.M., K.Sh.);National Institute of Vegetables and Tea Science, Taketoyo 470-2351, Japan (Mam.S.);RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan (R.N., Mak.S., K.Sa.);Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Naka, Sakai 599-8531, Japan (Y.O.);Kazusa DNA Research Institute, Kisarazu 292-0818, Japan (N.S.);Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan (T.T., S.G.);Database Center for Life Science, Research Organization of Information and Systems, Kashiwa 277-0871, Japan (T.T.);Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 60-637 Poznan, Poland (M.J.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 61-704 Poznan, Poland (M.J.);Institute of Plant Biology, University of Zurich, Zurich 8008, Switzerland (E.M.); andGraduate School of Pharmaceutical Sciences, Chiba University, Chuo, Chiba 260-8675, Japan (K.Sa.) shira@agr.nagoya-u.ac.jp.ORCID http://orcid.org/0000-0062-2608-7912
University of Life Sciences in Poznań · PLKyoto University · JPRIKEN Center for Sustainable Resource Science · JPChiba University · JPInstitute of Bioorganic Chemistry, Polish Academy of Sciences · PLKazusa DNA Research Institute · JPNagoya University · JPOsaka Prefecture University · JPUniversity of Zurich · CH
Funding
No grant is acknowledged in the PubMed record.
Abstract
Grape (Vitis vinifera) accumulates various polyphenolic compounds, which protect against environmental stresses, including ultraviolet-C (UV-C) light and pathogens. In this study, we looked at the transcriptome and metabolome in grape berry skin after UV-C irradiation, which demonstrated the effectiveness of omics approaches to clarify important traits of grape. We performed transcriptome analysis using a genome-wide microarray, which revealed 238 genes up-regulated more than 5-fold by UV-C light. Enrichment analysis of Gene Ontology terms showed that genes encoding stilbene synthase, a key enzyme for resveratrol synthesis, were enriched in the up-regulated genes. We performed metabolome analysis using liquid chromatography-quadrupole time-of-flight mass spectrometry, and 2,012 metabolite peaks, including unidentified peaks, were detected. Principal component analysis using the peaks showed that only one metabolite peak, identified as resveratrol, was highly induced by UV-C light. We updated the metabolic pathway map of grape in the Kyoto Encyclopedia of Genes and Genomes (KEGG) database and in the KaPPA-View 4 KEGG system, then projected the transcriptome and metabolome data on a metabolic pathway map. The map showed specific induction of the resveratrol synthetic pathway by UV-C light. Our results showed that multiomics is a powerful tool to elucidate the accumulation mechanisms of secondary metabolites, and updated systems, such as KEGG and KaPPA-View 4 KEGG for grape, can support such studies.
Indexed as
Biosynthetic PathwaysGene Expression ProfilingMetabolomicsUltraviolet RaysCalibrationDarknessFluorescenceFruitGene OntologyGenes, PlantMetabolomeMolecular Sequence AnnotationPrincipal Component AnalysisSecondary MetabolismStilbenesVitisStilbenes
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