Evidence map›Paper›PMID 25761473›Full record

ArticleCancer research and treatment2016

Interactome Analysis Reveals that Heterochromatin Protein 1γ (HP1γ) Is Associated with the DNA Damage Response Pathway.

Hongtae Kim, Jae Duk Choi, Byung-Gyu Kim, Ho Chul Kang, Jong-Soo Lee

Open access · hybridAbstract read
In one paragraph

Article in Cancer research and treatment, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Hongtae KimDepartment of Biological Sciences, Sungkyunkwan University, Suwon, Korea ; Genomic Instability Research Center, Ajou University School of Medicine, Suwon, Korea.
Jae Duk ChoiGenomic Instability Research Center, Ajou University School of Medicine, Suwon, Korea ; Department of Life Sciences, College of Natural Sciences, Ajou University, Suwon, Korea.
Byung-Gyu KimGenomic Instability Research Center, Ajou University School of Medicine, Suwon, Korea ; Leading-edge Research Center for Drug Discovery and Development and Metabolic Disease, Kyungpook National University, Daegu, Korea.
Ho Chul KangGenomic Instability Research Center, Ajou University School of Medicine, Suwon, Korea.
Jong-Soo LeeGenomic Instability Research Center, Ajou University School of Medicine, Suwon, Korea ; Department of Life Sciences, College of Natural Sciences, Ajou University, Suwon, Korea.
Ajou University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeHeterochromatin protein 1γ (HP1γ) interacts with chromosomes by binding to lysine 9-methylated histone H3 or DNA/RNA. HP1γ is involved in various biological processes. The purpose of this study is to gain an understanding of how HP1γ functions in these processes by identifying HP1γ-binding proteins using mass spectrometry. MATERIALS AND

methodsWe performed affinity purification of HP1γ-binding proteins using G1/S phase or prometaphase HEK293T cell lysates that transiently express mock or FLAG-HP1γ. Coomassie staining was performed for HP1γ-binding complexes, using cell lysates prepared by affinity chromatography FLAG-agarose beads, and the bands were digested and then analyzed using a mass spectrometry.

resultsWe identified 99 HP1γ-binding proteins with diverse cellular functions, including spliceosome, regulation of the actin cytoskeleton, tight junction, pathogenic Escherichia coli infection, mammalian target of rapamycin signaling pathway, nucleotide excision repair, DNA replication, homologous recombination, and mismatch repair.

conclusionOur results suggested that HP1γ is functionally active in DNA damage response via protein-protein interaction.

Indexed as

DNA DamageProtein Interaction MapsActinsCell ExtractsChromatography, AffinityChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneCytoskeletonDNA RepairDNA ReplicationG1 PhaseHEK293 CellsHomologous RecombinationHumansMass SpectrometryMetaphaseActinsCell ExtractsChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneMTOR protein, humanTOR Serine-Threonine KinasesDNA damage responseHP1γProtein interaction

Identifiers

PMID25761473
PMCPMC4720079
OpenAlexW2003202491

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.