Evidence map›Paper›PMID 25759704›Full record

ArticleFrontiers in plant science2015

Genome-wide identification and expression analysis of auxin response factor gene family in Medicago truncatula.

Chenjia Shen, Runqing Yue, Tao Sun, Lei Zhang, Luqin Xu, Shuanggui Tie, Huizhong Wang, Yanjun Yang

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
17.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 109 citations in OpenAlex.

  1. Review
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  4. ThePhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
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  7. Analysis of Auxin-Encoding Gene Family inPlants (Basel, Switzerland) · 2023
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  8. Article
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  12. Bioinformatics Study ofPlants (Basel, Switzerland) · 2022
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  17. Genome-WideGenes · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Chenjia ShenCollege of Life and Environmental Sciences, Hangzhou Normal University Hangzhou, China.
Runqing YueHenan Academy of Agricultural Sciences Zhengzhou, China.
Tao SunCollege of Life and Environmental Sciences, Hangzhou Normal University Hangzhou, China.
Lei ZhangDepartment of Plant Pathology, Washington State University Pullman, WA, USA.
Luqin XuCollege of Life and Environmental Sciences, Hangzhou Normal University Hangzhou, China.
Shuanggui TieHenan Academy of Agricultural Sciences Zhengzhou, China.
Huizhong WangCollege of Life and Environmental Sciences, Hangzhou Normal University Hangzhou, China.
Yanjun YangCollege of Life and Environmental Sciences, Hangzhou Normal University Hangzhou, China.
Hangzhou Normal University · CNWashington State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Auxin response factors (ARFs) bind specifically to auxin response elements (AuxREs) in the promoters of down-stream target genes and play roles in plant responses to diverse environmental factors. Using the latest updated Medicago truncatula reference genome sequence, a comprehensive characterization and analysis of 24 MtARF (M. truncatula ARF) genes were performed. To uncover the basic information and functions of MtARF genes during symbiosis, we analyzed the expression patterns of MtARF genes during the early phase of Sinorhizobium meliloti infection. The systematic analysis indicated that changes in MtARF gene expression occur during these early stages of infection, suggesting a functional role in symbiosis. Furthermore, the roles of MtARF-mediated auxin signaling in symbiosis were tested in the infection resistant mutant (dmi3). The expression responses of MtARFs to S. meliloti infection were attenuated in the mutant compared to wild-type A17. In summary, our results show that changes in MtARF gene expression occur during the response to S. meliloti infection, suggesting that members of this family may have important roles in the symbiotic interaction.

Indexed as

auxinauxin response factor (ARF)auxin signalingnodule formationSinorhizobium meliloti infection

Identifiers

PMID25759704
PMCPMC4338661
OpenAlexW2064319084

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.