Evidence map›Paper›PMID 25759529›Full record

ArticleWorld journal of gastroenterology2015

Isolation and diagnosis of Helicobacter pylori by a new method: microcapillary culture.

Adil M Allahverdiyev, Melahat Bagirova, Reyhan Caliskan, Hrisi Bahar Tokman, Hayat Aliyeva, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Pelin Yuksel and 5 more

Open access · hybridAbstract readComparative Study
In one paragraph

Article in World journal of gastroenterology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  6. Diagnosis ofJournal of pathogens · 2018
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  10. Hybrid Therapy versus Sequential Therapy for Eradication ofJournal of pharmacology & pharmacotherapeutics
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 4 countries.

Adil M AllahverdiyevAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Melahat BagirovaAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Reyhan CaliskanAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Hrisi Bahar TokmanAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Hayat AliyevaAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Gokce UnalAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Olga Nehir OztelAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Emrah Sefik AbamorAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Hilal ToptasAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Pelin YukselAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Fatma KalayciAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Mustafa AslanAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Yusuf ErzinAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Kadir BalAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Bekir S KocazeybekAdil M Allahverdiyev, Melahat Bagirova, Gokce Unal, Olga Nehir Oztel, Emrah Sefik Abamor, Hilal Toptas, Department of Bioengineering, Yildiz Technical University, 34201 Istanbul, Turkey.
Azerbaijan Medical University · AZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo investigate the performance of the microcapillary culture method (MCM) in Helicobacter pylori (H. pylori) isolation and diagnosis.

methodsMicrocapillary culture (MC), classical culture (CC), rapid urease (CLO) test, and histopathologic examination (HE) were performed with biopsy samples. Homogenized biopsy samples were loaded into capillary tubes and incubated for 48 h at 37 °C without providing a microaerophilic environment. Additionally, three or four loops of the homogenized sample were inoculated in a ready-to-use selective medium (Becton Dickinson, Helicobacter Agar, Modified) specific for the isolation of H. pylori and incubated at 37 °C in a microaerophilic atmosphere provided by CampyGen (Becton Dickinson, GasPack). Bacteria reproducing in microcapillary tubes were evaluated in an inverted microscope and also were evaluated after performing a CC with the content. Results obtained by CC, CLO test, and HE were compared with those of MC. The diagnostic performances of the methods used in this study were evaluated for specificity, sensitivity, positive predictive value (PPV), negative predictive value (NPV), and CI.

resultsH. pylori was found positive by CLO test + HE and/or CC culture in 26 patient antrum and corpus biopsy samples. In 25 (25/26) patient biopsy samples, H. pylori was isolated by MCM, whereas in only 14 (14/26) patient biopsy samples, H. pylori was isolated by CC. CLO test and HE were found positive in 17 (17/26) patient biopsy samples. Comparing the results of the isolation of H. pylori by MCM, CC, CLO test, and HE, the sensitivity of the MCM was found as 96%, the specificity as 80%, the PPV as 83%, the NPV as 95%, and the 95%CI as 0.76 (χ (2) = 31.51, P < 0.01) whereas the sensitivity of the CC was found as 54% (χ (2) = 19.15, P < 0.01), and the sensitivity of the CLO test and HE were found as 65% (χ (2) = 25.26, P < 0.01).

conclusionThis new microcapillary cultivation method for H. pylori has high diagnostic sensitivity compared with CC, HE, and CLO tests.

Indexed as

Bacteriological TechniquesBiopsyBreath TestsCase-Control StudiesChi-Square DistributionDyspepsiaHelicobacter InfectionsHelicobacter pyloriHumansPredictive Value of TestsReproducibility of ResultsStomachClassical cultureComparisonIsolation of Helicobacter pyloriMicrocapillary cultureNew method

Identifiers

PMID25759529
PMCPMC4351211
OpenAlexW2171750708

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.