Evidence map›Paper›PMID 25759437›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Heme-thiolate ferryl of aromatic peroxygenase is basic and reactive.

Xiaoshi Wang, René Ullrich, Martin Hofrichter, John T Groves

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
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  6. Non-Canonical Cytochrome P450 Enzymes in Nature.bioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. Article
  9. Heme-copper and Heme OJournal of inorganic biochemistry · 2023
    Review
  10. Factors controlling the reactivity of synthetic compound-I Analogs.Journal of porphyrins and phthalocyanines · 2023
    Article
  11. Dimer-assisted mechanism of (un)saturated fatty acid decarboxylation for alkene production.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Molecular Dynamics Simulations of a Cytochrome P450 fromMolecules (Basel, Switzerland) · 2021
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Xiaoshi WangDepartment of Chemistry, Princeton University, Princeton, NJ 08544; and.
René UllrichDepartment of Bio- and Environmental Sciences, International Institute Zittau, Dresden University of Technology, 02763 Zittau, Germany.
Martin HofrichterDepartment of Bio- and Environmental Sciences, International Institute Zittau, Dresden University of Technology, 02763 Zittau, Germany.
John T GrovesDepartment of Chemistry, Princeton University, Princeton, NJ 08544; and jtgroves@princeton.edu.
Princeton University · USInternational University Institute · DETU Dresden · DE

Funding

Molecular Probes of the Mechanisms of Cytocrhome P450R37GM036298 · NIGMS · PRINCETON UNIVERSITY · PI GROVES, JOHN TAYLOR · 2007 to 2016
$3.7M
NIGMS NIH HHS 2R37GM036298NIGMS NIH HHS R37 GM036298
6 · The paper itself

Abstract

A kinetic and spectroscopic characterization of the ferryl intermediate (APO-II) from APO, the heme-thiolate peroxygenase from Agrocybe aegerita, is described. APO-II was generated by reaction of the ferric enzyme with metachloroperoxybenzoic acid in the presence of nitroxyl radicals and detected with the use of rapid-mixing stopped-flow UV-visible (UV-vis) spectroscopy. The nitroxyl radicals served as selective reductants of APO-I, reacting only slowly with APO-II. APO-II displayed a split Soret UV-vis spectrum (370 nm and 428 nm) characteristic of thiolate ligation. Rapid-mixing, pH-jump spectrophotometry revealed a basic pKa of 10.0 for the Fe(IV)-O-H of APO-II, indicating that APO-II is protonated under typical turnover conditions. Kinetic characterization showed that APO-II is unusually reactive toward a panel of benzylic C-H and phenolic substrates, with second-order rate constants for C-H and O-H bond scission in the range of 10-10(7) M(-1)⋅s(-1). Our results demonstrate the important role of the axial cysteine ligand in increasing the proton affinity of the ferryl oxygen of APO intermediates, thus providing additional driving force for C-H and O-H bond scission.

Indexed as

AgrocybeCarbonHemeHydrogenHydrogen-Ion ConcentrationMixed Function OxygenasesNitrogenOxidation-ReductionOxygenPhenolSpectrophotometry, UltravioletSubstrate SpecificitySulfhydryl CompoundsTemperatureCarbonHemeHydrogenMixed Function OxygenasesNitrogenOxygenperoxygenasePhenolSulfhydryl CompoundsAPOcompound IIferrylHATUPO

Identifiers

PMID25759437
PMCPMC4378415
OpenAlexW1997507314

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.