Evidence map›Paper›PMID 25759384›Full record

ArticleThe Journal of biological chemistry2015

The structure of the atypical killer cell immunoglobulin-like receptor, KIR2DL4.

Shoeib Moradi, Richard Berry, Phillip Pymm, Corinne Hitchen, Simone A Beckham, Matthew C J Wilce, Nicholas G Walpole, Craig S Clements, Hugh H Reid, Matthew A Perugini and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 46 citations in OpenAlex.

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  13. HLA-G Neo-Expression on Tumors.Frontiers in immunology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Shoeib MoradiFrom the Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, and.
Richard BerryFrom the Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, and the Australian Research Council Centre of Excellence for Advanced Molecular Imaging, Monash University, Clayton, Victoria 3800, Australia.
Phillip PymmFrom the Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, and.
Corinne HitchenFrom the Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, and.
Simone A BeckhamFrom the Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, and.
Matthew C J WilceFrom the Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, and.
Nicholas G WalpoleFrom the Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, and.
Craig S ClementsFrom the Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, and.
Hugh H ReidFrom the Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, and.
Matthew A Peruginithe Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne Victoria 3086 Australia.
Andrew G Brooksthe Department of Microbiology and Immunology, Peter Doherty Institute for Infection and Immunity, University of Melbourne, Parkville, Victoria 3010, Australia, and.
Jamie RossjohnFrom the Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, and the Australian Research Council Centre of Excellence for Advanced Molecular Imaging, Monash University, Clayton, Victoria 3800, Australia, the Institute of Infection and Immunity, Cardiff University, School of Medicine, Heath Park, Cardiff CF14 4XN, United Kingdom Jamie.rossjohn@monash.edu.
Julian P VivianFrom the Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, and the Australian Research Council Centre of Excellence for Advanced Molecular Imaging, Monash University, Clayton, Victoria 3800, Australia, Julian.vivian@monash.edu.
CSIRO Manufacturing · AUAustralian Research Council · AUCardiff University · GBLa Trobe University · AUUniversity of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The engagement of natural killer cell immunoglobulin-like receptors (KIRs) with their target ligands, human leukocyte antigen (HLA) molecules, is a critical component of innate immunity. Structurally, KIRs typically have either two (D1-D2) or three (D0-D1-D2) extracellular immunoglobulin domains, with the D1 and D2 domain recognizing the α1 and α2 helices of HLA, respectively, whereas the D0 domain of the KIR3DLs binds a loop region flanking the α1 helix of the HLA molecule. KIR2DL4 is distinct from other KIRs (except KIR2DL5) in that it does not contain a D1 domain and instead has a D0-D2 arrangement. Functionally, KIR2DL4 is also atypical in that, unlike all other KIRs, KIR2DL4 has both activating and inhibitory signaling domains. Here, we determined the 2.8 Å crystal structure of the extracellular domains of KIR2DL4. Structurally, KIR2DL4 is reminiscent of other KIR2DL receptors, with the D0 and D2 adopting the C2-type immunoglobulin fold arranged with an acute elbow angle. However, KIR2DL4 self-associated via the D0 domain in a concentration-dependent manner and was observed as a tetramer in the crystal lattice by size exclusion chromatography, dynamic light scattering, analytical ultracentrifugation, and small angle x-ray scattering experiments. The assignment of residues in the D0 domain to forming the KIR2DL4 tetramer precludes an interaction with HLA akin to that observed for KIR3DL1. Accordingly, no interaction was observed to HLA by direct binding studies. Our data suggest that the unique functional properties of KIR2DL4 may be mediated by self-association of the receptor.

Indexed as

Amino Acid SequenceAnimalsBaculoviridaeCloning, MolecularCrystallography, X-RayEscherichia coliGene ExpressionHLA-B AntigensHLA-G AntigensModels, MolecularMolecular Sequence DataMothsProtein MultimerizationProtein Structure, SecondaryProtein Structure, TertiaryReceptors, KIR2DL4HLA-B*57:01 antigenHLA-B AntigensHLA-G AntigensKIR2DL4 protein, humanReceptors, KIR2DL4Recombinant ProteinsImmunoglobulin FoldNatural Killer Cells (NK Cells)Protein StructureReceptor Structure-FunctionSmall Angle X-ray Scattering (SAXS)

Identifiers

PMID25759384
PMCPMC4400354
OpenAlexW2026588672

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.