Evidence map›Paper›PMID 25758825›Full record

ArticleG3 (Bethesda, Md.)2015

Finding a Missing Gene: EFG1 Regulates Morphogenesis in Candida tropicalis.

Eugenio Mancera, Allison M Porman, Christina A Cuomo, Richard J Bennett, Alexander D Johnson

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 46 citations in OpenAlex.

  1. Microorganisms · 2026
    Review
  2. Article
  3. Article
  4. Optimization ofFrontiers in bioengineering and biotechnology · 2025
    Article
  5. Review
  6. Genetic modification ofMicrobiology (Reading, England) · 2024
    Article
  7. Vitamin DCurrent medical mycology · 2023
    Article
  8. Article
  9. Article
  10. A common vesicle proteome drives fungal biofilm development.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. Article
  13. Molecular Epidemiology, Antifungal Susceptibility, and Virulence Evaluation ofFrontiers in cellular and infection microbiology · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Genetic Modification of Closely RelatedFrontiers in microbiology · 2019
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Eugenio ManceraDepartment of Microbiology and Immunology and.ORCID http://orcid.org/0000-0003-0146-8732
Allison M PormanDepartment of Microbiology and Immunology, Brown University, Providence, Rhode Island 02912.
Christina A CuomoBroad Institute of MIT and Harvard, Cambridge, Massachusetts 02142.
Richard J BennettDepartment of Microbiology and Immunology, Brown University, Providence, Rhode Island 02912.
Alexander D JohnsonDepartment of Microbiology and Immunology and Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California 94158.
Brown University · USBroad Institute · USUniversity of California, San Francisco · US

Funding

Regulatory Circuits and Virulence in Candida albicansR01AI049187 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSON, ALEXANDER D · 2001 to 2021
$13.1M
Transcriptional Regulation of C. albicans Cell Fate and Host InteractionsR01AI081704 · NIAID · BROWN UNIVERSITY · PI Richard John Bennett · 2010 to 2026
$6.4M
TRAINING IN MOLECULAR &CELL BIOLOGY &BIOCHEMISTRYT32GM007601 · NIGMS · BROWN UNIVERSITY · PI MOWRY, KIMBERLY L. · 1985 to 2019
$6.4M
The transcriptional circuitry controlling biofilm development in Candida albicansR01AI083311 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSON, ALEXANDER D · 2011 to 2020
$4.3M
Phenotypic Plasticity and Sexual Reproduction in Candida tropicalis PathogenesisF31DE022703 · NIDCR · BROWN UNIVERSITY · PI SWAIN, ALLISON MARLY PORMAN · 2012 to 2014
$63k
NIAID NIH HHS AI081704NIAID NIH HHS AI083311NIAID NIH HHS HHSN272200900018CNIAID NIH HHS R01 AI049187NIAID NIH HHS R01 AI081704NIAID NIH HHS R01 AI083311NIDCR NIH HHS F31 DE022703NIDCR NIH HHS F31DE022703NIGMS NIH HHS T32 GM007601
6 · The paper itself

Abstract

Fungi from the genus Candida are common members of the human microbiota; however, they are also important opportunistic pathogens in immunocompromised hosts. Several morphological transitions have been linked to the ability of these fungi to occupy the different ecological niches in the human body. The transcription factor Efg1 from the APSES family plays a central role in the transcription circuits underlying several of these morphological changes. In Candida albicans, for example, Efg1 is a central regulator of filamentation, biofilm formation, and white-opaque switching, processes associated with survival in the human host. Orthologs of Efg1 are present throughout the Candida clade but, surprisingly, the genome sequence of Candida tropicalis failed to uncover a gene coding for Efg1. One possibility was that the paralog of Efg1, Efh1, had assumed the function of Efg1 in C. tropicalis. However, we show that this gene has only a minor role in the morphological transitions mentioned above. Instead, we report here that C. tropicalis does have an ortholog of the EFG1 gene found in other Candida species. The gene is located in a different genomic position than EFG1 in C. albicans, in a region that contains a gap in the current genome assembly of C. tropicalis. We show that the newly identified C. tropicalis EFG1 gene regulates filamentation, biofilm formation, and white-opaque switching. Our results highlight the conserved role of Efg1 in controlling morphogenesis in Candida species and remind us that published genome sequences are drafts that require continuous curation and careful scrutiny.

Indexed as

BiofilmsCandida tropicalisFungal ProteinsGene OrderGenome, FungalMorphogenesisPhenotypePhylogenySequence Analysis, DNATranscription FactorsFungal ProteinsTranscription FactorsbiofilmCandida morphogenesisfilamentationphenotypic switchtranscriptional regulation

Identifiers

PMID25758825
PMCPMC4426371
OpenAlexW2140646298

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.