Evidence map›Paper›PMID 25758652›Full record

ArticleThe American journal of tropical medicine and hygiene2015

The Effect of Storage and Extraction Methods on Amplification of Plasmodium falciparum DNA from Dried Blood Spots.

Alanna Schwartz, Amrish Baidjoe, Philip J Rosenthal, Grant Dorsey, Teun Bousema, Bryan Greenhouse

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of tropical medicine and hygiene, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 54 citations in OpenAlex.

  1. Trial
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  16. Preservation and Extraction of Malaria Parasite DNA from Dried Blood Spots.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  17. Review
  18. Article
  19. Malaria infection prevalence and sensitivity of reactive case detection in Zanzibar.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Alanna SchwartzDepartment of Medicine, Division of Infectious Diseases, University of California San Francisco, San Francisco, California; Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands; Department of Immunology and Infection, London School of Hygiene and Tropical Medicine, London, United Kingdom alanna.schwartz@ucsf.edu.
Amrish BaidjoeDepartment of Medicine, Division of Infectious Diseases, University of California San Francisco, San Francisco, California; Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands; Department of Immunology and Infection, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Philip J RosenthalDepartment of Medicine, Division of Infectious Diseases, University of California San Francisco, San Francisco, California; Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands; Department of Immunology and Infection, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Grant DorseyDepartment of Medicine, Division of Infectious Diseases, University of California San Francisco, San Francisco, California; Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands; Department of Immunology and Infection, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Teun BousemaDepartment of Medicine, Division of Infectious Diseases, University of California San Francisco, San Francisco, California; Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands; Department of Immunology and Infection, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Bryan GreenhouseDepartment of Medicine, Division of Infectious Diseases, University of California San Francisco, San Francisco, California; Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands; Department of Immunology and Infection, London School of Hygiene and Tropical Medicine, London, United Kingdom.
University of London · GB

Funding

Transmission ProjectU19AI089674 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MATTHEW G DORSEY · 2010 to 2026
$29.3M
NIAID NIH HHS U19 AI089674PHS HHS U19 A1089674
6 · The paper itself

Abstract

Extraction and amplification of DNA from dried blood spots (DBS) collected in field studies is commonly used for detection of Plasmodium falciparum. However, there have been few systematic efforts to determine the effects of storage and extraction methods on the sensitivity of DNA amplification. We investigated the effects of storage conditions, length of storage, and DNA extraction methods on amplification via three PCR-based assays using field samples and laboratory controls. Samples stored as DBS for 2 or more years at ambient temperature showed a significant loss of sensitivity that increased with time; after 10 years only 10% samples with parasite densities > 1,000 parasites/μL were detectable by nested polymerase chain reaction (PCR). Conversely, DBS and extracted DNA stored at -20°C showed no loss of sensitivity with time. Samples with low parasite densities amplified more successfully with saponin/Chelex compared with spin-column-based extraction, though the latter method performed better on samples with higher parasite densities stored for 2 years at ambient temperature. DNA extracted via both methods was stable after 20 freeze-thaw cycles. Our results suggest that DBS should be stored at -20°C or extracted immediately, especially if anticipating 2 or more years of storage.

Indexed as

DNA, ProtozoanFreezingMalaria, FalciparumModels, StatisticalPlasmodium falciparumPolymerase Chain ReactionSensitivity and SpecificitySpecimen HandlingTemperatureTime FactorsDNA, Protozoan

Identifiers

PMID25758652
PMCPMC4426578
OpenAlexW2095315281

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.