Evidence map›Paper›PMID 25756792›Full record

ArticlePloS one2015

Functional analysis helps to define KCNC3 mutational spectrum in Dutch ataxia cases.

Anna Duarri, Esther A R Nibbeling, Michiel R Fokkens, Michel Meijer, Melissa Boerrigter, Corien C Verschuuren-Bemelmans, Berry P H Kremer, Bart P van de Warrenburg, Dennis Dooijes, Erik Boddeke and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Proper localization of the SCA13-linked KNeurobiology of disease · 2026
    Article
  4. Article
  5. Kv3.3 Expression Enhanced by a Novel Variant in the Kozak Sequence ofInternational journal of molecular sciences · 2024
    Article
  6. Article
  7. Article
  8. A novelFrontiers in cellular neuroscience · 2024
    Article
  9. Review
  10. A missense mutation inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. KCNC1-related disorders: new de novo variants expand the phenotypic spectrum.Annals of clinical and translational neurology · 2019
    Article
  16. Article
  17. Kv4.2 autism and epilepsy mutation enhances inactivation of closed channels but impairs access to inactivated state after opening.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Anna DuarriDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Esther A R NibbelingDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Michiel R FokkensDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Michel MeijerDepartment of Medical Physiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Melissa BoerrigterDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Corien C Verschuuren-BemelmansDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Berry P H KremerDepartment of Neurology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Bart P van de WarrenburgDepartment of Neurology, Radboud University Medical Center, Nijmegen, The Netherlands.
Dennis DooijesDepartment of Medical Genetics, University Medical Center Utrecht, Utrecht, The Netherlands.
Erik BoddekeDepartment of Medical Physiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Richard J SinkeDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Dineke S VerbeekDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
University of Groningen · NLUniversity Medical Center Groningen · NLRadboud University Medical Center · NLUniversity Medical Center Utrecht · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spinocerebellar ataxia type 13 (SCA13) is an autosomal dominantly inherited neurodegenerative disorder of the cerebellum caused by mutations in the voltage gated potassium channel KCNC3. To identify novel pathogenic SCA13 mutations in KCNC3 and to gain insights into the disease prevalence in the Netherlands, we sequenced the entire coding region of KCNC3 in 848 Dutch cerebellar ataxia patients with familial or sporadic origin. We evaluated the pathogenicity of the identified variants by co-segregation analysis and in silico prediction followed by biochemical and electrophysiological studies. We identified 19 variants in KCNC3 including 2 non-coding, 11 missense and 6 synonymous variants. Two missense variants did not co-segregate with the disease and were excluded as potentially disease-causing mutations. We also identified the previously reported p.R420H and p.R423H mutations in our cohort. Of the remaining 7 missense variants, functional analysis revealed that 2 missense variants shifted Kv3.3 channel activation to more negative voltages. These variations were associated with early disease onset and mild intellectual disability. Additionally, one other missense variant shifted channel activation to more positive voltages and was associated with spastic ataxic gait. Whereas, the remaining missense variants did not change any of the channel characteristics. Of these three functional variants, only one variant was in silico predicted to be damaging and segregated with disease. The other two variants were in silico predicted to be benign and co-segregation analysis was not optimal or could only be partially confirmed. Therefore, we conclude that we have identified at least one novel pathogenic mutation in KCNC3 that cause SCA13 and two additionally potential SCA13 mutations. This leads to an estimate of SCA13 prevalence in the Netherlands to be between 0.6% and 1.3%.

Indexed as

AdultAgedComputer SimulationGenetic Association StudiesGenetic Predisposition to DiseaseHeLa CellsHumansMiddle AgedMutationNetherlandsSequence Analysis, DNAShaw Potassium ChannelsSpinocerebellar AtaxiasWhite PeopleYoung AdultKCNC3 protein, humanShaw Potassium Channels

Identifiers

PMID25756792
PMCPMC4355074
OpenAlexW2069586649

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.