Evidence map›Paper›PMID 25755285›Full record

ArticleMolecular and cellular biology2015

The Human GATA1 Gene Retains a 5' Insulator That Maintains Chromosomal Architecture and GATA1 Expression Levels in Splenic Erythroblasts.

Takashi Moriguchi, Lei Yu, Jun Takai, Makiko Hayashi, Hironori Satoh, Mikiko Suzuki, Kinuko Ohneda, Masayuki Yamamoto

Open access · bronzeAbstract read
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Article in Molecular and cellular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Takashi MoriguchiDepartment of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan moriguch@med.tohoku.ac.jp masiyamamoto@med.tohoku.ac.jp.
Lei YuDepartment of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan.
Jun TakaiDepartment of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan.
Makiko HayashiDepartment of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan.
Hironori SatohDepartment of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan.
Mikiko SuzukiDepartment of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan.
Kinuko OhnedaDepartment of Pharmacy, Takasaki University of Health and Welfare, Takasaki, Japan.
Masayuki YamamotoDepartment of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan moriguch@med.tohoku.ac.jp masiyamamoto@med.tohoku.ac.jp.
Tohoku University · JPTakasaki University of Health and Welfare · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

GATA1 is a key transcription factor for erythropoiesis. GATA1 gene expression is strictly regulated at the transcriptional level. While the regulatory mechanisms governing mouse Gata1 (mGata1) gene expression have been studied extensively, how expression of the human GATA1 (hGATA1) gene is regulated remains to be elucidated. To address this issue, we generated hGATA1 bacterial artificial chromosome (BAC) transgenic mouse lines harboring a 183-kb hGATA1 locus covering the hGATA1 exons and distal flanking sequences. Transgenic hGATA1 expression coincides with endogenous mGata1 expression and fully rescues hematopoietic deficiency in mGata1 knockdown mice. The transgene exhibited copy number-dependent and integration position-independent expression of hGATA1, indicating the presence of chromatin insulator activity within the transgene. We found a novel insulator element at 29 kb 5' to the hGATA1 gene and refer to this element as the 5' CCCTC-binding factor (CTCF) site. Substitution mutation of the 5' CTCF site in the hGATA1 BAC disrupted the chromatin architecture and led to a reduction of hGATA1 expression in splenic erythroblasts under conditions of stress erythropoiesis. Our results demonstrate that expression of the hGATA1 gene is regulated through the chromatin architecture organized by 5' CTCF site-mediated intrachromosomal interactions in the hGATA1 locus.

Indexed as

Insulator ElementsAnimalsBinding SitesCCCTC-Binding FactorCells, CulturedChromatinChromosomesChromosomes, Artificial, BacterialErythroblastsGATA1 Transcription FactorGenetic VectorsHumansK562 CellsMiceMice, TransgenicRepressor ProteinsCCCTC-Binding FactorChromatinCTCF protein, humanCtcf protein, mouseGATA1 protein, humanGata1 protein, mouseGATA1 Transcription FactorRepressor Proteins

Identifiers

PMID25755285
PMCPMC4405652
OpenAlexW2333414476

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.