Evidence map›Paper›PMID 25755249›Full record

ArticleThe EMBO journal2015

An LXR-NCOA5 gene regulatory complex directs inflammatory crosstalk-dependent repression of macrophage cholesterol efflux.

Mark A Gillespie, Elizabeth S Gold, Stephen A Ramsey, Irina Podolsky, Alan Aderem, Jeffrey A Ranish

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

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  13. A novel tumor suppressor geneOncoTargets and therapy · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Mark A GillespieInstitute for Systems Biology, Seattle, WA, USA.
Elizabeth S GoldSeattle Biomedical Research Institute, Seattle, WA, USA.
Stephen A RamseyDepartment of Biomedical Sciences, Oregon State University, Corvallis, OR, USA.
Irina PodolskySeattle Biomedical Research Institute, Seattle, WA, USA.
Alan AderemSeattle Biomedical Research Institute, Seattle, WA, USA.
Jeffrey A RanishInstitute for Systems Biology, Seattle, WA, USA jeff.ranish@systemsbiology.org.
Center for Infectious Disease Research · USInstitute for Systems Biology · USOregon State University · US

Funding

Systems Biology CoreU19AI100627 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI ULEVITCH, RICHARD J · 2012 to 2021
$49.1M
Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI OZINSKY, ADRIAN · 2006 to 2016
$30.6M
LPS Signaling in Macrophages: The Roll of TollR01AI032972 · NIAID · UNIVERSITY OF WASHINGTON · PI ADEREM, ALAN A · 1992 to 2020
$14.6M
LPS REGULATION OF MACROPHAGE FUNCTIONR01AI025032 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI ADEREM, ALAN A · 1987 to 2016
$6.7M
Systems analysis of transcriptional interactions underlying foam cell formationK25HL098807 · NHLBI · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI RAMSEY, STEPHEN A. · 2010 to 2013
$584k
Canadian Institutes of Health Research MFE-112984NHLBI NIH HHS HL098807NHLBI NIH HHS K25 HL098807NIAID NIH HHS R01 AI025032NIAID NIH HHS R01 AI032972NIAID NIH HHS U19 AI100627NIGMS NIH HHS 2P50 GM076547NIGMS NIH HHS P50 GM076547
6 · The paper itself

Abstract

LXR-cofactor complexes activate the gene expression program responsible for cholesterol efflux in macrophages. Inflammation antagonizes this program, resulting in foam cell formation and atherosclerosis; however, the molecular mechanisms underlying this antagonism remain to be fully elucidated. We use promoter enrichment-quantitative mass spectrometry (PE-QMS) to characterize the composition of gene regulatory complexes assembled at the promoter of the lipid transporter Abca1 following downregulation of its expression. We identify a subset of proteins that show LXR ligand- and binding-dependent association with the Abca1 promoter and demonstrate they differentially control Abca1 expression. We determine that NCOA5 is linked to inflammatory Toll-like receptor (TLR) signaling and establish that NCOA5 functions as an LXR corepressor to attenuate Abca1 expression. Importantly, TLR3-LXR signal crosstalk promotes recruitment of NCOA5 to the Abca1 promoter together with loss of RNA polymerase II and reduced cholesterol efflux. Together, these data significantly expand our knowledge of regulatory inputs impinging on the Abca1 promoter and indicate a central role for NCOA5 in mediating crosstalk between pro-inflammatory and anti-inflammatory pathways that results in repression of macrophage cholesterol efflux.

Indexed as

AnimalsATP Binding Cassette Transporter 1CholesterolFemaleGene Expression RegulationInflammationLiver X ReceptorsMacrophagesMass SpectrometryMice, Inbred C57BLMice, KnockoutNuclear Receptor CoactivatorsOrphan Nuclear ReceptorsPromoter Regions, GeneticRNA Polymerase IISignal TransductionAbca1 protein, mouseATP Binding Cassette Transporter 1CholesterolLiver X ReceptorsNCOA5 protein, mouseNuclear Receptor CoactivatorsOrphan Nuclear ReceptorsRNA Polymerase IITLR3 protein, mouseToll-Like Receptor 3atherosclerosisinflammationLXRNCOA5quantitative mass spectrometry

Identifiers

PMID25755249
PMCPMC4426483
OpenAlexW2139532004

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.