Evidence map›Paper›PMID 25755111›Full record

ArticleCytometry. Part A : the journal of the International Society for Analytical Cytology2015

Three-color confocal Förster (or fluorescence) resonance energy transfer microscopy: Quantitative analysis of protein interactions in the nucleation of actin filaments in live cells.

Horst Wallrabe, Yuansheng Sun, Xiaolan Fang, Ammasi Periasamy, George S Bloom

Open access · bronzeAbstract read
In one paragraph

Article in Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Horst WallrabeDepartment of Biology, W.M. Keck Center for Cellular Imaging, University of Virginia, Charlottesville, Virginia.
Yuansheng SunDepartment of Biology, W.M. Keck Center for Cellular Imaging, University of Virginia, Charlottesville, Virginia.
Xiaolan FangDepartment of Biology, University of Virginia, Charlottesville, Virginia.
Ammasi PeriasamyDepartment of Biology, W.M. Keck Center for Cellular Imaging, University of Virginia, Charlottesville, Virginia.
George S BloomDepartment of Biology, University of Virginia, Charlottesville, Virginia.
University of Virginia · US

Funding

S-nitrosothiol signaling in pulmonary epithelial cellsP01HL101871 · NHLBI · UNIVERSITY OF VIRGINIA · PI GASTON, BENJAMIN, LEWIS, STEPHEN JOHN · 2011 to 2015
$8.7M
Airway redox biochemistry as a deteriminant of asthma phenotype during adolescen*U10HL109250 · NHLBI · UNIVERSITY OF VIRGINIA · PI ERZURUM, SERPIL C., GASTON, BENJAMIN · 2011 to 2016
$4.2M
Regulation of Actin Assembly and Cell Motility by IQGAPsR01NS051746 · NINDS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI BLOOM, GEORGE S · 2005 to 2009
$1.7M
Tunable White Light Laser Confocal/Spectral Imaging MicroscopyS10RR025616 · NCRR · UNIVERSITY OF VIRGINIA · PI PERIASAMY, AMMASI · 2009 to 2009
$500k
NCRR NIH HHS S10 RR025616NHLBI NIH HHS HL101871NHLBI NIH HHS P01 HL101871NHLBI NIH HHS U10 HL109250NINDS NIH HHS NS051746NINDS NIH HHS R01 NS051746
6 · The paper itself

Abstract

Experiments using live cell 3-color Förster (or fluorescence) resonance energy transfer (FRET) microscopy and corresponding in vitro biochemical reconstitution of the same proteins were conducted to evaluate actin filament nucleation. A novel application of 3-color FRET data is demonstrated, extending the analysis beyond the customary energy-transfer efficiency (E%) calculations. MDCK cells were transfected for coexpression of Teal-N-WASP/Venus-IQGAP1/mRFP1-Rac1, Teal-N-WASP/Venus-IQGAP1/mRFP1-Cdc42, CFP-Rac1/Venus-IQGAP1/mCherry-actin, or CFP-Cdc42/Venus-IQGAP1/mCherry-actin, and with single-label equivalents for spectral bleedthrough correction. Using confirmed E% as an entry point, fluorescence levels and related ratios were correlated at discrete accumulating levels at cell peripheries. Rising ratios of CFP-Rac1:Venus-IQGAP1 were correlated with lower overall actin fluorescence, whereas the CFP-Cdc42:Venus-IQGAP1 ratio correlated with increased actin fluorescence at low ratios, but was neutral at higher ratios. The new FRET analyses also indicated that rising levels of mRFP1-Cdc42 or mRFP1-Rac1, respectively, promoted or suppressed the association of Teal-N-WASP with Venus-IQGAP1. These 3-color FRET assays further support our in vitro results about the role of IQGAP1, Rac1, and Cdc42 in actin nucleation, and the differential impact of Rac1 and Cdc42 on the association of N-WASP with IQGAP1. In addition, this study emphasizes the power of 3-color FRET as a systems biology strategy for simultaneous evaluation of multiple interacting proteins in individual live cells.

Indexed as

Actin CytoskeletonAnimalscdc42 GTP-Binding ProteinCell LineDogsFluorescence Resonance Energy TransferMadin Darby Canine Kidney CellsMicroscopy, ConfocalMicroscopy, Fluorescencerac1 GTP-Binding Proteinras GTPase-Activating ProteinsSignal TransductionWiskott-Aldrich Syndrome Protein, Neuronalcdc42 GTP-Binding ProteinIQ motif containing GTPase activating protein 1rac1 GTP-Binding Proteinras GTPase-Activating ProteinsWiskott-Aldrich Syndrome Protein, Neuronalactin nucleationCdc42E%: energy-transfer efficiencyIQGAP1Key terms: FRET: Förster (or fluorescence) resonance energy transferN-WASPPFRET: processed FRET or spectral bleedthrough-corrected FRETquantitative FRET analysisRac1ROI: region of interest

Identifiers

PMID25755111
PMCPMC4452401
OpenAlexW1937181441

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.