ArticleDatabase : the journal of biological databases and curation2015
mycoCLAP, the database for characterized lignocellulose-active proteins of fungal origin: resource and text mining curation support.
Article in Database : the journal of biological databases and curation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 32 citations in OpenAlex.
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- Comparative Genomics Used to Predict Virulence Factors and Metabolic Genes amongJournal of fungi (Basel, Switzerland) · 2021Article
- Host Cell Wall Damage during Pathogen Infection: Mechanisms of Perception and Role in Plant-Pathogen Interactions.Plants (Basel, Switzerland) · 2021Review
- Comparative Transcriptome and Endophytic Bacterial Community Analysis ofFrontiers in microbiology · 2021Article
- Information Retrieval Using Machine Learning for Biomarker Curation in the Exposome-Explorer.Frontiers in research metrics and analytics · 2021Article
- Insights into the mechanism of cyanobacteria removal by the algicidal fungi Bjerkandera adusta and Trametes versicolor.MicrobiologyOpen · 2020Article
- Redesigning N-glycosylation sites in a GH3 β-xylosidase improves the enzymatic efficiency.Biotechnology for biofuels · 2019Article
- An effective biomedical document classification scheme in support of biocuration: addressing class imbalance.Database : the journal of biological databases and curation · 2019Article
- Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli.Studies in mycology · 2018Article
- The Algicidal FungusFrontiers in microbiology · 2018Article
- Expression ofBiotechnology for biofuels · 2017Article
- Network reconstruction and systems analysis of plant cell wall deconstruction byBiotechnology for biofuels · 2017Article
Corrections and comments
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Authors and funding
11 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Enzymes active on components of lignocellulosic biomass are used for industrial applications ranging from food processing to biofuels production. These include a diverse array of glycoside hydrolases, carbohydrate esterases, polysaccharide lyases and oxidoreductases. Fungi are prolific producers of these enzymes, spurring fungal genome sequencing efforts to identify and catalogue the genes that encode them. To facilitate the functional annotation of these genes, biochemical data on over 800 fungal lignocellulose-degrading enzymes have been collected from the literature and organized into the searchable database, mycoCLAP (http://mycoclap.fungalgenomics.ca). First implemented in 2011, and updated as described here, mycoCLAP is capable of ranking search results according to closest biochemically characterized homologues: this improves the quality of the annotation, and significantly decreases the time required to annotate novel sequences. The database is freely available to the scientific community, as are the open source applications based on natural language processing developed to support the manual curation of mycoCLAP. Database URL: http://mycoclap.fungalgenomics.ca.
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