Evidence map›Paper›PMID 25754775›Full record

ArticleCurrent genetics2015

Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species.

Erica S Lassiter, Carsten Russ, Chad Nusbaum, Qiandong Zeng, Amanda C Saville, Rodrigo A Olarte, Ignazio Carbone, Chia-Hui Hu, Andaine Seguin-Orlando, Jose A Samaniego and 2 more

Abstract read
In one paragraph

Article in Current genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Evolutionary Relationships of theEcology and evolution · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Comparative Mitochondrial Genome Analysis of Two Ectomycorrhizal Fungi (International journal of molecular sciences · 2019
    Article
  9. Article
  10. Persoonia · 2018
    Article
  11. Article
  12. Complete mitogenome mapping of potato late blight pathogen,Mitochondrial DNA. Part B, Resources · 2017
    Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Erica S LassiterDepartment of Biological Sciences, North Carolina State University, Raleigh, NC, 27695, USA.
Carsten RussBROAD Institute, MIT, Cambridge, MA, 02142, USA.
Chad NusbaumBROAD Institute, MIT, Cambridge, MA, 02142, USA.
Qiandong ZengBROAD Institute, MIT, Cambridge, MA, 02142, USA.
Amanda C SavilleDepartment of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
Rodrigo A OlarteDepartment of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
Ignazio CarboneDepartment of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
Chia-Hui HuDepartment of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
Andaine Seguin-OrlandoCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.
Jose A SamaniegoCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.
Jeffrey L ThorneDepartment of Biological Sciences and Department of Statistics, North Carolina State University, Raleigh, NC 27695, USA.
Jean B RistainoDepartment of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA. jean_ristaino@ncsu.edu.

Funding

Evolutionary inferences from protein-coding genesR01GM070806 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI STONE, ERIC A, THORNE, JEFFREY L. · 2005 to 2013
$1.7M
NIGMS NIH HHS GM070806NIGMS NIH HHS R01 GM070806
6 · The paper itself

Abstract

Phytophthora infestans is one of the most destructive plant pathogens of potato and tomato globally. The pathogen is closely related to four other Phytophthora species in the 1c clade including P. phaseoli, P. ipomoeae, P. mirabilis and P. andina that are important pathogens of other wild and domesticated hosts. P. andina is an interspecific hybrid between P. infestans and an unknown Phytophthora species. We have sequenced mitochondrial genomes of the sister species of P. infestans and examined the evolutionary relationships within the clade. Phylogenetic analysis indicates that the P. phaseoli mitochondrial lineage is basal within the clade. P. mirabilis and P. ipomoeae are sister lineages and share a common ancestor with the Ic mitochondrial lineage of P. andina. These lineages in turn are sister to the P. infestans and P. andina Ia mitochondrial lineages. The P. andina Ic lineage diverged much earlier than the P. andina Ia mitochondrial lineage and P. infestans. The presence of two mitochondrial lineages in P. andina supports the hybrid nature of this species. The ancestral state of the P. andina Ic lineage in the tree and its occurrence only in the Andean regions of Ecuador, Colombia and Peru suggests that the origin of this species hybrid in nature may occur there.

Indexed as

Genome, MitochondrialPhylogenyBiological EvolutionChimeraColombiaDNA, MitochondrialEcuadorMitochondriaPeruPhylogeographyPhytophthoraPhytophthora infestansPlant DiseasesSequence Analysis, DNASolanum lycopersicumSolanum tuberosumDNA, MitochondrialLate blightMitochondriaPhylogeneticsPhytophthora 1 c clade

Identifiers

PMID25754775
PMCPMC4659649

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.