Evidence map›Paper›PMID 25753666›Full record

ArticleNucleic acids research2015

Identification of metabolically stable 5'-phosphate analogs that support single-stranded siRNA activity.

Thazha P Prakash, Walt F Lima, Heather M Murray, Wenyu Li, Garth A Kinberger, Alfred E Chappell, Hans Gaus, Punit P Seth, Balkrishen Bhat, Stanley T Crooke and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Chemical Modifications in Nucleic Acid Therapeutics.Methods in molecular biology (Clifton, N.J.) · 2025
    Review
  11. Review
  12. Article
  13. Review
  14. Oligonucleotide therapies for nonalcoholic steatohepatitis.Molecular therapy. Nucleic acids · 2024
    Review
  15. Review
  16. Review
  17. Review
  18. Review
  19. Review
  20. Structural Modifications of siRNA Improve Its Performance In Vivo.International journal of molecular sciences · 2023
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Thazha P PrakashIsis Pharmaceuticals Inc., 2855 Gazelle Ct, Carlsbad, CA 92010, USA tprakash@isisph.com.
Walt F LimaIsis Pharmaceuticals Inc., 2855 Gazelle Ct, Carlsbad, CA 92010, USA.
Heather M MurrayIsis Pharmaceuticals Inc., 2855 Gazelle Ct, Carlsbad, CA 92010, USA.
Wenyu LiIsis Pharmaceuticals Inc., 2855 Gazelle Ct, Carlsbad, CA 92010, USA.
Garth A KinbergerIsis Pharmaceuticals Inc., 2855 Gazelle Ct, Carlsbad, CA 92010, USA.
Alfred E ChappellIsis Pharmaceuticals Inc., 2855 Gazelle Ct, Carlsbad, CA 92010, USA.
Hans GausIsis Pharmaceuticals Inc., 2855 Gazelle Ct, Carlsbad, CA 92010, USA.
Punit P SethIsis Pharmaceuticals Inc., 2855 Gazelle Ct, Carlsbad, CA 92010, USA.
Balkrishen BhatIsis Pharmaceuticals Inc., 2855 Gazelle Ct, Carlsbad, CA 92010, USA.
Stanley T CrookeIsis Pharmaceuticals Inc., 2855 Gazelle Ct, Carlsbad, CA 92010, USA.
Eric E SwayzeIsis Pharmaceuticals Inc., 2855 Gazelle Ct, Carlsbad, CA 92010, USA.
Ionis Pharmaceuticals (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ss-siRNA activity in vivo requires a metabolically stable 5'-phosphate analog. In this report we used crystal structure of the 5'-phosphate binding pocket of Ago-2 bound with guide strand to design and synthesize ss-siRNAs containing various 5'-phosphate analogs. Our results indicate that the electronic and spatial orientation of the 5'-phosphate analog was critical for ss-siRNA activity. Chemically modified ss-siRNA targeting human apoC III mRNA demonstrated good potency for inhibiting ApoC III mRNA and protein in transgenic mice. Moreover, ApoC III ss-siRNAs were able to reduce the triglyceride and LDL cholesterol in transgenic mice demonstrating pharmacological effect of ss-siRNA. Our study provides guidance to develop surrogate phosphate analog for ss-siRNA and demonstrates that ss-siRNA provides an alternative strategy for therapeutic gene silencing.

Indexed as

AnimalsApolipoprotein C-IIIArgonaute ProteinsBase SequenceBinding SitesCholesterol, LDLHeLa CellsHumansMaleMiceMice, Inbred BALB CMice, TransgenicModels, MolecularMolecular StructureNucleic Acid ConformationPhosphatesAGO2 protein, humanApolipoprotein C-IIIArgonaute ProteinsCholesterol, LDLPhosphatesRecombinant ProteinsRNA, MessengerRNA, Small InterferingTriglycerides

Identifiers

PMID25753666
PMCPMC4381071
OpenAlexW2093206703

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.