Evidence map›Paper›PMID 25753662›Full record

ArticleNucleic acids research2015

An intrinsically disordered region of methyl-CpG binding domain protein 2 (MBD2) recruits the histone deacetylase core of the NuRD complex.

Megha A Desai, Heather D Webb, Leander M Sinanan, J Neel Scarsdale, Ninad M Walavalkar, Gordon D Ginder, David C Williams

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 94 citations in OpenAlex.

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  18. Epigenetics-targeted drugs: current paradigms and future challenges.Signal transduction and targeted therapy · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Megha A DesaiDepartment of Human and Molecular Genetics and Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298, USA.
Heather D WebbDepartment of Pathology and Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298, USA.
Leander M SinananDepartment of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
J Neel ScarsdaleInstitute of Structural Biology and Drug Design, Center for the Study of Biological Complexity, and Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298, USA.
Ninad M WalavalkarDepartment of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Gordon D GinderDepartments of Internal Medicine, Human and Molecular Genetics, and Microbiology and Immunology and Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298, USA gdginder@vcu.edu.
David C WilliamsDepartment of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA david_willjr@med.unc.edu.
University of North Carolina at Chapel Hill · USVirginia Commonwealth University · US

Funding

Virus Vector Shared ResourceP30CA016059 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI Keri R Maher · 1985 to 2026
$51.0M
GLOBIN GENE REGULATION DURING ERYTHROID DIFFERENTIATIONR01DK029902 · NIDDK · VIRGINIA COMMONWEALTH UNIVERSITY · PI GINDER, GORDON D · 1986 to 2010
$2.5M
Structural and functional diversity of the methyl-binding domain protein familyR01GM098264 · NIGMS · VIRGINIA COMMONWEALTH UNIVERSITY · PI WILLIAMS, DAVID COLLIN · 2012 to 2016
$1.4M
NCI NIH HHS P30 CA016059NIDDK NIH HHS R01 DK029902NIGMS NIH HHS [5R01GM098264-3NIGMS NIH HHS R01 GM098264NIGMS NIH HHS R01 GM098624
6 · The paper itself

Abstract

The MBD2-NuRD (Nucleosome Remodeling and Deacetylase) complex is an epigenetic reader of DNA methylation that regulates genes involved in normal development and neoplastic diseases. To delineate the architecture and functional interactions of the MBD2-NuRD complex, we previously solved the structures of MBD2 bound to methylated DNA and a coiled-coil interaction between MBD2 and p66α that recruits the CHD4 nucleosome remodeling protein to the complex. The work presented here identifies novel structural and functional features of a previously uncharacterized domain of MBD2 (MBD2IDR). Biophysical analyses show that the MBD2IDR is an intrinsically disordered region (IDR). However, despite this inherent disorder, MBD2IDR increases the overall binding affinity of MBD2 for methylated DNA. MBD2IDR also recruits the histone deacetylase core components (RbAp48, HDAC2 and MTA2) of NuRD through a critical contact region requiring two contiguous amino acid residues, Arg(286) and Leu(287). Mutating these residues abrogates interaction of MBD2 with the histone deacetylase core and impairs the ability of MBD2 to repress the methylated tumor suppressor gene PRSS8 in MDA-MB-435 breast cancer cells. These findings expand our knowledge of the multi-dimensional interactions of the MBD2-NuRD complex that govern its function.

Indexed as

Amino Acid SequenceAnimalsCell LineDNA-Binding ProteinsDNA MethylationEpigenesis, GeneticGene Knockdown TechniquesHEK293 CellsHumansIntrinsically Disordered ProteinsKineticsMi-2 Nucleosome Remodeling and Deacetylase ComplexMiceModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedDNA-Binding ProteinsIntrinsically Disordered ProteinsMBD2 protein, humanMbd2 protein, mouseMi-2 Nucleosome Remodeling and Deacetylase ComplexRecombinant Proteins

Identifiers

PMID25753662
PMCPMC4381075
OpenAlexW2020688831

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.