Evidence map›Paper›PMID 25753587›Full record

ArticleEnvironmental microbiology2015

Biosynthesis of the antifungal haterumalide, oocydin A, in Serratia, and its regulation by quorum sensing, RpoS and Hfq.

Miguel A Matilla, Finian J Leeper, George P C Salmond

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Article
  3. The porcine skin microbiome exhibits broad fungal antagonism.Fungal genetics and biology : FG & B · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Genomic and Phenotypic Biology of Novel Strains ofFrontiers in plant science · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. A Polyketide Synthase Component for Oxygen Insertion into Polyketide Backbones.Angewandte Chemie (International ed. in English) · 2018
    Article
  19. Article
  20. Genome Sequence ofGenome announcements · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Miguel A MatillaDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW, UK.
Finian J LeeperDepartment of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
George P C SalmondDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW, UK.
University of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E015581/1Biotechnology and Biological Sciences Research Council BB/F009666/1Biotechnology and Biological Sciences Research Council BB/G000298/1
6 · The paper itself

Abstract

Polyketides represent an important class of bioactive natural products with a broad range of biological activities. We identified recently a large trans-acyltransferase (AT) polyketide synthase gene cluster responsible for the biosynthesis of the antifungal, anti-oomycete and antitumor haterumalide, oocydin A (ooc). Using genome sequencing and comparative genomics, we show that the ooc gene cluster is widespread within biocontrol and phytopathogenic strains of the enterobacteria, Serratia and Dickeya. The analysis of in frame deletion mutants confirmed the role of a hydroxymethylglutaryl-coenzyme A synthase cassette, three flavin-dependent tailoring enzymes, a free-standing acyl carrier protein and two hypothetical proteins in oocydin A biosynthesis. The requirement of the three trans-acting AT domains for the biosynthesis of the macrolide was also demonstrated. Expression of the ooc gene cluster was shown to be positively regulated by an N-acyl-L-homoserine lactone-based quorum sensing system, but operating in a strain-dependent manner. At a post-transcriptional level, the RNA chaperone, Hfq, plays a key role in oocydin A biosynthesis. The Hfq-dependent regulation is partially mediated by the stationary phase sigma factor, RpoS, which was also shown to positively regulate the synthesis of the macrolide. Our results reveal differential regulation of the divergently transcribed ooc transcriptional units, highlighting the complexity of oocydin A production.

Indexed as

Acyl-ButyrolactonesAntifungal AgentsBacterial ProteinsBase SequenceHost Factor 1 ProteinHydroxymethylglutaryl-CoA SynthaseLactonesMacrolidesMultigene FamilyPolyketide SynthasesQuorum SensingSequence DeletionSerratiaSigma FactorAcyl-ButyrolactonesAntifungal AgentsBacterial ProteinsHost Factor 1 ProteinHydroxymethylglutaryl-CoA SynthaseLactonesMacrolidesoocydin APolyketide SynthasesSigma Factorsigma factor KatF protein, Bacteria

Identifiers

PMID25753587
PMCPMC4552970
OpenAlexW1492747717

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.