Evidence map›Paper›PMID 25753420›Full record

ArticleCell reports2015

Ascl1 Coordinately Regulates Gene Expression and the Chromatin Landscape during Neurogenesis.

Alexandre A S F Raposo, Francisca F Vasconcelos, Daniela Drechsel, Corentine Marie, Caroline Johnston, Dirk Dolle, Angela Bithell, Sébastien Gillotin, Debbie L C van den Berg, Laurence Ettwiller and 7 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 197 citations in OpenAlex.

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  11. Lineage-Selective Dependencies in Pediatric Cancers.Cold Spring Harbor perspectives in medicine · 2025
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55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 13 institutions in 6 countries.

Alexandre A S F RaposoInstituto Gulbenkian de Ciência, 2780-156 Oeiras, Portugal.
Francisca F VasconcelosInstituto Gulbenkian de Ciência, 2780-156 Oeiras, Portugal.
Daniela DrechselMRC National Institute for Medical Research, London NW7 1AA, UK.
Corentine MarieInserm U1127, CNRS UMR 7225, Sorbonne Universités, UPMC University Paris 06, UMR-S 1127, Institut du Cerveau et de la Moelle Épinière, ICM, 75013 Paris, France.
Caroline JohnstonCentre for the Cellular Basis of Behavior, Institute of Psychiatry, King's College London, London SE5 9NU, UK.
Dirk DolleEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK; Wellcome Trust Sanger Institute, Welcome Trust Genome Campus, Cambridge CB10 1SA, UK.
Angela BithellUniversity of Reading, School of Pharmacy, Hopkins Life Sciences Building, Reading RG6 6AP, UK.
Sébastien GillotinMRC National Institute for Medical Research, London NW7 1AA, UK.
Debbie L C van den BergMRC National Institute for Medical Research, London NW7 1AA, UK.
Laurence EttwillerCentre for Organismal Studies (COS), Ruprecht-Karls-University, 69120 Heidelberg, Germany.
Paul FlicekEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK; Wellcome Trust Sanger Institute, Welcome Trust Genome Campus, Cambridge CB10 1SA, UK.
Gregory E CrawfordInstitute of Genome Sciences & Policy, Duke University, Durham, NC 27708, USA.
Carlos M ParrasInserm U1127, CNRS UMR 7225, Sorbonne Universités, UPMC University Paris 06, UMR-S 1127, Institut du Cerveau et de la Moelle Épinière, ICM, 75013 Paris, France.
Benedikt BerningerInstitute of Physiological Chemistry, University Medical Center Johannes Gutenberg University Mainz, 55128 Mainz, Germany; Department of Physiological Genomics, Institute of Physiology, Ludwig-Maximilians University Munich, 80336 Munich, Germany.
Noel J BuckleyDepartment of Psychiatry, University of Oxford, Oxford OX3 7JX, UK.
François GuillemotMRC National Institute for Medical Research, London NW7 1AA, UK.
Diogo S CastroInstituto Gulbenkian de Ciência, 2780-156 Oeiras, Portugal. Electronic address: dscastro@igc.gulbenkian.pt.
Instituto Gulbenkian de Ciência · PTNational Institute for Medical Research · TZCentre National de la Recherche Scientifique · FRDuke University · USEuropean Bioinformatics Institute · GBEuropean Molecular Biology Organization · DEInstitut du Cerveau · FRKing's College London · GBLMU Klinikum · DESorbonne Université · FRUniversity of Oxford · GBUniversity of Reading · GBWellcome Trust · GB

Funding

Medical Research Council MC_U117570528Wellcome Trust 098051
6 · The paper itself

Abstract

The proneural transcription factor Ascl1 coordinates gene expression in both proliferating and differentiating progenitors along the neuronal lineage. Here, we used a cellular model of neurogenesis to investigate how Ascl1 interacts with the chromatin landscape to regulate gene expression when promoting neuronal differentiation. We find that Ascl1 binding occurs mostly at distal enhancers and is associated with activation of gene transcription. Surprisingly, the accessibility of Ascl1 to its binding sites in neural stem/progenitor cells remains largely unchanged throughout their differentiation, as Ascl1 targets regions of both readily accessible and closed chromatin in proliferating cells. Moreover, binding of Ascl1 often precedes an increase in chromatin accessibility and the appearance of new regions of open chromatin, associated with de novo gene expression during differentiation. Our results reveal a function of Ascl1 in promoting chromatin accessibility during neurogenesis, linking the chromatin landscape at Ascl1 target regions with the temporal progression of its transcriptional program.

Identifiers

PMID25753420
PMCPMC5383937
OpenAlexW2148802440

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.