Evidence map›Paper›PMID 25752604›Full record

ArticleThe Journal of biological chemistry2015

Variable Substrate Preference among Phospholipase D Toxins from Sicariid Spiders.

Daniel M Lajoie, Sue A Roberts, Pamela A Zobel-Thropp, Jared L Delahaye, Vahe Bandarian, Greta J Binford, Matthew H J Cordes

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 49 citations in OpenAlex.

  1. Spider venom phospholipase D toxin structure: Interfacial binding site, mechanism, activation, and head group preference.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  13. Evaluation of the effects ofToxicology reports · 2022
    Article
  14. Article
  15. Pain-related toxins in scorpion and spider venoms: a face to face with ion channels.The journal of venomous animals and toxins including tropical diseases · 2021
    Review
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Daniel M LajoieFrom the Department of Chemistry and Biochemistry, University of Arizona, Tucson, Arizona 85721 and.
Sue A RobertsFrom the Department of Chemistry and Biochemistry, University of Arizona, Tucson, Arizona 85721 and.
Pamela A Zobel-Throppthe Department of Biology, Lewis and Clark College, Portland, Oregon 97219.
Jared L Delahayethe Department of Biology, Lewis and Clark College, Portland, Oregon 97219.
Vahe BandarianFrom the Department of Chemistry and Biochemistry, University of Arizona, Tucson, Arizona 85721 and.
Greta J Binfordthe Department of Biology, Lewis and Clark College, Portland, Oregon 97219.
Matthew H J CordesFrom the Department of Chemistry and Biochemistry, University of Arizona, Tucson, Arizona 85721 and cordes@email.arizona.edu.
University of Arizona · USLewis & Clark College · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Biosynthesis of Deazapurine-Containing MetabolitesR01GM072623 · NIGMS · UNIVERSITY OF UTAH · PI BANDARIAN, VAHE · 2005 to 2017
$3.9M
Study of copper oxidoreductases through metalloprotein engineeringR15GM097676 · NIGMS · UNIVERSITY OF MINNESOTA DULUTH · PI BERRY, STEVEN M · 2012 to 2012
$311k
NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41GM103393NIGMS NIH HHS R01 GM072623NIGMS NIH HHS R01 GM72623NIGMS NIH HHS R15 GM097676NIGMS NIH HHS R15-GM-097676-01
6 · The paper itself

Abstract

Venoms of the sicariid spiders contain phospholipase D enzyme toxins that can cause severe dermonecrosis and even death in humans. These enzymes convert sphingolipid and lysolipid substrates to cyclic phosphates by activating a hydroxyl nucleophile present in both classes of lipid. The most medically relevant substrates are thought to be sphingomyelin and/or lysophosphatidylcholine. To better understand the substrate preference of these toxins, we used (31)P NMR to compare the activity of three related but phylogenetically diverse sicariid toxins against a diverse panel of sphingolipid and lysolipid substrates. Two of the three showed significantly faster turnover of sphingolipids over lysolipids, and all three showed a strong preference for positively charged (choline and/or ethanolamine) over neutral (glycerol and serine) headgroups. Strikingly, however, the enzymes vary widely in their preference for choline, the headgroup of both sphingomyelin and lysophosphatidylcholine, versus ethanolamine. An enzyme from Sicarius terrosus showed a strong preference for ethanolamine over choline, whereas two paralogous enzymes from Loxosceles arizonica either preferred choline or showed no significant preference. Intrigued by the novel substrate preference of the Sicarius enzyme, we solved its crystal structure at 2.1 Å resolution. The evolution of variable substrate specificity may help explain the reduced dermonecrotic potential of some natural toxin variants, because mammalian sphingolipids use primarily choline as a positively charged headgroup; it may also be relevant for sicariid predatory behavior, because ethanolamine-containing sphingolipids are common in insect prey.

Indexed as

AnimalsArthropod ProteinsCrystallography, X-RayLipidsNuclear Magnetic Resonance, BiomolecularPhospholipase DSpidersSpider VenomsSubstrate SpecificityArthropod ProteinsLipidsPhospholipase DSpider VenomsCrystal StructureEnzyme MechanismLoxoscelesLoxoscelismPhospholipase DSicariusSphingomyelinaseSubstrate SpecificityToxin

Identifiers

PMID25752604
PMCPMC4409260
OpenAlexW2034914705

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.