Evidence map›Paper›PMID 25751231›Full record

ArticleJournal of acquired immune deficiency syndromes (1999)2015

N463 Glycosylation Site on V5 Loop of a Mutant gp120 Regulates the Sensitivity of HIV-1 to Neutralizing Monoclonal Antibodies VRC01/03.

Wenbo Wang, Brett Zirkle, Jianhui Nie, Jian Ma, Kai Gao, Xiaojiang S Chen, Weijing Huang, Wei Kong, Youchun Wang

Open access · greenAbstract read
In one paragraph

Article in Journal of acquired immune deficiency syndromes (1999), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Pseudotyped Viruses for Lyssavirus.Advances in experimental medicine and biology · 2023
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  3. Lentil lectin derived fromEmerging microbes & infections · 2021
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  4. SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Review
  6. SARS-CoV-2 escapebioRxiv : the preprint server for biology · 2020
    Article
  7. Article
  8. Article
  9. Review
  10. Protein and Glycan Mimicry in HIV Vaccine Design.Journal of molecular biology · 2019
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Wenbo Wang*College of Life Science, Jilin University, Changchun, China; †Key Laboratory of the Ministry of Health for Research on Quality and Standardization of Biotech Products, Division of Monoclonal Antibody, National Institutes for Food and Drug Control (NIFDC), Beijing, China; ‡Department of Molecular and Computational Biology/Chemistry Department/Norris Cancer Center, University of Southern California, Los Angeles, CA; and §Key Laboratory of the Ministry of Health for Research on Quality and Standardization of Biotech Products, Division of HIV/AIDS and Sex-Transmitted Virus Vaccines, National Institutes for Food and Drug Control (NIFDC), Beijing, China.
Brett Zirkle
Jianhui Nie
Jian Ma
Kai Gao
Xiaojiang S Chen
Weijing Huang
Wei Kong
Youchun Wang
National Institutes for Food and Drug Control · CNJilin University · CNUniversity of Southern California · US

Funding

Understanding The Structural Basis of APOBEC FunctionsR01GM087986 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, XIAOJIANG S · 2009 to 2018
$2.5M
NIGMS NIH HHS GM087986NIGMS NIH HHS R01 GM087986
6 · The paper itself

Abstract

backgroundHIV-1 gp120/gp41 is heavily modified by n-linked carbohydrates that play important roles either in correct folding or in shielding vulnerable viral protein surfaces from antibody recognition.

methodsIn our previous work, 25 potential N-linked glycosylation sites (PNGS) of a CRF07_BC isolate of HIV-1 were individually mutated, and the resulting effects on infectivity and antibody-mediated neutralization were evaluated. To further understand the functional role of these PNGS, we generated double and multiple mutants from selected individual PNGS mutants. The effects were then evaluated by examining infectivity and sensitivity to antibody-mediated neutralization by neutralizing monoclonal antibodies (nMAbs) and serum antibodies from HIV-1 positive donors.

resultsInfectivity results showed that, among the 12 combined PNGS mutants, only 197M.1 (N197D/N301Q) lost infectivity completely, whereas all others (except for 197M.6) showed reduced viral infectivity. In terms of neutralization sensitivity to known nMAbs, we found that adding N463Q mutation to all the gp120 mutants containing N197D significantly increased neutralization sensitivity to VRC01 and VRC03, suggesting N197 and N463 have a strong synergistic effect in regulating the neutralizing sensitivity of HIV-1 to the anti-CD4bs nMAbs VRC01/VRC03. Structural analysis based on the available structures of gp120 alone and in complex with CD4 and various nMAbs elucidates a molecular rationale for this experimental observation.

conclusionsThe data indicate that N463 plays an important role in regulating the CD4bs MAbs VRC01/VRC03 sensitivity in the genetic background of N197D mutation of gp120, which should provide valuable information for a better understanding of the interplay between HIV-1 and VRC01/03.

Indexed as

Antibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralBinding Sites, AntibodyCD4 AntigensCell LineGlycosylationHIV-1HIV Envelope Protein gp120HIV InfectionsHumansMutagenesis, Site-DirectedMutationProtein FoldingAntibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralCD4 Antigensgp120 protein, Human immunodeficiency virus 1HIV Envelope Protein gp120

Identifiers

PMID25751231
PMCPMC4506726
OpenAlexW2058501504

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.