Evidence map›Paper›PMID 25749814›Full record

ArticleMolecular biology reports2015

Porcine EEF1A1 and EEF1A2 genes: genomic structure, polymorphism, mapping and expression.

Kateřina Svobodová, Pavel Horák, Antonín Stratil, Heinz Bartenschlager, Mario Van Poucke, Pavla Chalupová, Věra Dvořáková, Christoph Knorr, Roman Stupka, Jaroslav Čítek and 5 more

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Kateřina SvobodováDepartment of Morphology, Physiology and Animal Genetics, Mendel University in Brno, Zemědělská 1, 613 00, Brno, Czech Republic.
Pavel Horák
Antonín Stratil
Heinz Bartenschlager
Mario Van Poucke
Pavla Chalupová
Věra Dvořáková
Christoph Knorr
Roman Stupka
Jaroslav Čítek
Michal Šprysl
Anna Palánová
Luc J Peelman
Hermann Geldermann
Aleš Knoll
Czech Academy of Sciences, Institute of Animal Physiology and Genetics · CZCzech University of Life Sciences Prague · CZGhent University · BEMendel University in Brno · CZUniversity of Hohenheim · DECentral European Institute of Technology · CZUniversity of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eukaryotic translation elongation factor 1 alpha (EEF1A) plays a key role in protein synthesis. In higher vertebrates EEF1A occurs in two isoforms, EEF1A1 and EEF1A2, encoded by distinct genes. The purpose of this study was to compare the two porcine genes as for the genomic sequence, gene organization and mRNA expression in different tissues, as well as to search for polymorphism and chromosomal assignment. Standard methods of DNA and mRNA analysis were used. We determined the complete genomic sequence of the porcine EEF1A1 and EEF1A2 genes. The two genes differ in the lengths of transcription units (3102 and 8588 bp, respectively), but have similar genomic organization and their coding sequences are highly similar (78% identity of coding sequences and 92.4% identity of amino acid sequences). Several polymorphisms in the two genes were detected. EEF1A1 and EEF1A2 were mapped to SSC1p11.1 and SSC17q23.3, respectively. mRNA of EEF1A1 was expressed in all studied tissues (the highest expression was in 44-day fetal muscle and low expression in adult liver and brain), while EEF1A2 was expressed only in skeletal-muscle, tongue, heart, diaphragm and brain tissues. EEF1A2 was not expressed in fetal muscle tissue (44 days). In this paper results are provided on genomic sequences, genomic organization, polymorphism, chromosomal assignment and spatial and temporal expressions of the porcine EEF1A1 and EEF1A2 genes. Novel polymorphisms were described in both genes. Porcine EEF1A2 was studied for the first time.

Indexed as

Polymorphism, GeneticAnimalsBase SequenceGene ExpressionGene Expression ProfilingGenomicsMolecular Sequence DataOrgan SpecificityPeptide Elongation Factor 1Peptide Elongation Factor 2Sequence Analysis, DNASus scrofaPeptide Elongation Factor 1Peptide Elongation Factor 2

Identifiers

PMID25749814
OpenAlexW2083093482

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.