Evidence map›Paper›PMID 25748361›Full record

ReviewBiochimica et biophysica acta2015

Structure-specific nucleic acid recognition by L-motifs and their diverse roles in expression and regulation of the genome.

Roopa Thapar

Open access · greenAbstract readReview
In one paragraph

Review in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Stem-loop binding protein and metal carcinogenesis.Seminars in cancer biology · 2021
    Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Roopa ThaparBioSciences at Rice-Biochemistry and Cell Biology, Rice University, Houston, TX 77251-1892, USA. Electronic address: rthapar@rice.edu.
Rice University · US

Funding

Phosphorylation dependent recognition of a histone mRNA hairpin by SLBPR01GM076660 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MARZLUFF, WILLIAM F. · 2006 to 2009
$1.1M
NIGMS NIH HHS 1R01-GM076660NIGMS NIH HHS R01 GM076660
6 · The paper itself

Abstract

The high-mobility group (HMG) domain containing proteins regulate transcription, DNA replication and recombination. They adopt L-shaped folds and are structure-specific DNA binding motifs. Here, I define the L-motif super-family that consists of DNA-binding HMG-box proteins and the L-motif of the histone mRNA binding domain of stem-loop binding protein (SLBP). The SLBP L-motif and HMG-box domains adopt similar L-shaped folds with three α-helices and two or three small hydrophobic cores that stabilize the overall fold, but have very different and distinct modes of nucleic acid recognition. A comparison of the structure, dynamics, protein-protein and nucleic acid interactions, and regulation by PTMs of the SLBP and the HMG-box L-motifs reveals the versatile and diverse modes by which L-motifs utilize their surfaces for structure-specific recognition of nucleic acids to regulate gene expression.

Indexed as

Gene Expression RegulationAmino Acid MotifsDNA-Binding ProteinsHMG-Box DomainsHumansInverted Repeat SequencesmRNA Cleavage and Polyadenylation FactorsNuclear ProteinsNucleic Acid ConformationPhosphorylationProtein ConformationProtein FoldingRNA-Binding ProteinsDNA-Binding ProteinsmRNA Cleavage and Polyadenylation FactorsNuclear ProteinsRNA-Binding ProteinsSLBP protein, humanDNA binding domainHMG-box domainPhosphorylationProtein-nucleic acid interactionRNA binding domainStem-loop binding protein (SLBP)

Identifiers

PMID25748361
PMCPMC4437830
OpenAlexW2006159929

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.