Evidence map›Paper›PMID 25747400›Full record

ReviewAnnual review of biochemistry2015

Termination of Transcription of Short Noncoding RNAs by RNA Polymerase II.

Karen M Arndt, Daniel Reines

Abstract readReview
In one paragraph

Review in Annual review of biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 72 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Karen M ArndtDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260; email: arndt@pitt.edu.
Daniel Reines
Emory University · USUniversity of Pittsburgh · US

Funding

TRANSCRIPTION FACTOR MUTANTS OF YEASTR01GM052593 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ARNDT, KAREN M · 1995 to 2020
$7.9M
RNA POLYMERASE II ELONGATION COMPLEX--STRUCTURE/FUNCTIONR01GM046331 · NIGMS · EMORY UNIVERSITY · PI REINES, DANIEL · 1991 to 2013
$3.5M
Biochemical & Genetic Analysis of Low Complexity Domains in RNA-binding protein biologyR01GM120271 · NIGMS · EMORY UNIVERSITY · PI REINES, DANIEL · 2016 to 2019
$1.3M
NIGMS NIH HHS GM46331NIGMS NIH HHS GM52593NIGMS NIH HHS R01 GM046331NIGMS NIH HHS R01 GM052593NIGMS NIH HHS R01 GM120271
6 · The paper itself

Abstract

The RNA polymerase II transcription cycle is often divided into three major stages: initiation, elongation, and termination. Research over the last decade has blurred these divisions and emphasized the tightly regulated transitions that occur as RNA polymerase II synthesizes a transcript from start to finish. Transcription termination, the process that marks the end of transcription elongation, is regulated by proteins that interact with the polymerase, nascent transcript, and/or chromatin template. The failure to terminate transcription can cause accumulation of aberrant transcripts and interfere with transcription at downstream genes. Here, we review the mechanism, regulation, and physiological impact of a termination pathway that targets small noncoding transcripts produced by RNA polymerase II. We emphasize the Nrd1-Nab3-Sen1 pathway in yeast, in which the process has been extensively studied. The importance of understanding small RNA termination pathways is underscored by the need to control noncoding transcription in eukaryotic genomes.

Indexed as

Transcription Termination, GeneticAnimalsCell Physiological PhenomenaHumansRNA Polymerase IIRNA Processing, Post-TranscriptionalRNA, Small UntranslatedSaccharomyces cerevisiaeRNA Polymerase IIRNA, Small UntranslatedhelicaseNab3Nrd1ribonucleoproteinSen1

Identifiers

PMID25747400
PMCPMC5104496
OpenAlexW2110174032

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.